RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SIGMAR1Q99720 223 aa9.5□□□□□ -0.89
SHMT1-205ENST00000395684 MRPL16Q9NX20 251 aaKnown RBP9.5□□□□□ -0.89
SHMT1-205ENST00000395684 H3BUA1 57 aa9.5□□□□□ -0.89
SHMT1-205ENST00000395684 UBE2D1P51668 147 aa9.5□□□□□ -0.89
SHMT1-205ENST00000395684 FAM159AQ6UWV7 190 aa9.5□□□□□ -0.89
SHMT1-205ENST00000395684 DAZ1Q9NQZ3 744 aaKnown RBP9.5□□□□□ -0.89
SHMT1-205ENST00000395684 A6NDX4 124 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 RPL32P62910 135 aaKnown RBP9.49□□□□□ -0.89
SHMT1-205ENST00000395684 J3QR89 54 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 SMAGPQ0VAQ4 97 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 SFTA2Q6UW10 78 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 TRAV12-3A0A0B4J271 114 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 IGLV1-40P01703 118 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 CD7P09564 240 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 PMVKQ15126 192 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 DCANP1Q8TF63 244 aa9.49□□□□□ -0.89
SHMT1-205ENST00000395684 A0A0J9YY99 117 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 F5H697 171 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 VCYO14598 125 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 SMCPP49901 116 aaPredicted RBP9.48□□□□□ -0.89
SHMT1-205ENST00000395684 SPATA25Q9BR10 227 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 TMEM238LA0A1B0GVL6 79 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 SDHAF1A6NFY7 115 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 A6NJY4 79 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 CIDEAO60543 219 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 TSPAN13O95857 204 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 TSPEAR-AS2P59090 65 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 ZNRF2Q8NHG8 242 aa9.48□□□□□ -0.89
SHMT1-205ENST00000395684 FLNCQ14315 2725 aa9.47□□□□□ -0.89
SHMT1-205ENST00000395684 KIR2DL4Q99706 377 aa9.47□□□□□ -0.89
SHMT1-205ENST00000395684 APOMO95445 188 aa9.47□□□□□ -0.89
SHMT1-205ENST00000395684 CFAP126Q5VTH2 177 aa9.47□□□□□ -0.89
SHMT1-205ENST00000395684 UTP20O75691 2785 aaKnown RBP9.46□□□□□ -0.89
SHMT1-205ENST00000395684 CHD6Q8TD26 2715 aa9.46□□□□□ -0.89
SHMT1-205ENST00000395684 PAPPA-AS1Q5QFB9 102 aa9.46□□□□□ -0.89
SHMT1-205ENST00000395684 FAM74A4Q5TZK3 123 aa9.46□□□□□ -0.89
SHMT1-205ENST00000395684 TMEM141Q96I45 108 aa9.46□□□□□ -0.89
SHMT1-205ENST00000395684 TIMM17AQ99595 171 aa9.46□□□□□ -0.89
SHMT1-205ENST00000395684 LOC107984156A0A0G2JMH3 177 aa9.46□□□□□ -0.9
SHMT1-205ENST00000395684 TRBV27A0A0K0K1C4 114 aa9.46□□□□□ -0.9
SHMT1-205ENST00000395684 CFHR3Q02985 330 aa9.46□□□□□ -0.9
SHMT1-205ENST00000395684 TMEM170BQ5T4T1 132 aa9.46□□□□□ -0.9
SHMT1-205ENST00000395684 ARL17AQ8IVW1 177 aa9.46□□□□□ -0.9
SHMT1-205ENST00000395684 DLX4Q92988 240 aaPredicted RBP9.46□□□□□ -0.9
SHMT1-205ENST00000395684 MDFICQ9P1T7 246 aa9.46□□□□□ -0.9
SHMT1-205ENST00000395684 NDUFS8O00217 210 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 PSMB2P49721 201 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 UBE2D3P61077 147 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 HERVK_113P61574 105 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 UBE2D2P62837 147 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 TMEM95Q3KNT9 176 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 ZNF876PQ49A33 203 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 NDUFA11Q86Y39 141 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 PIMREGQ9BSJ6 248 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 TRAV12-2A0A075B6T6 113 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 K7EMT4 169 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 LGALS9O00182 355 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 ID1P41134 155 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 AMELXQ99217 191 aa9.45□□□□□ -0.9
SHMT1-205ENST00000395684 OPRPNQ99935 248 aaPredicted RBP9.45□□□□□ -0.9
SHMT1-205ENST00000395684 ZNF256Q9Y2P7 627 aaPredicted RBP9.45□□□□□ -0.9
SHMT1-205ENST00000395684 CELSR2Q9HCU4 2923 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 IGKV3-20P01619 116 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 IGHV3-30P01768 117 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 IGHV3-30-5P0DP03 117 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 C10orf105Q8TEF2 133 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 IGHV3-16A0A0C4DH30 117 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 TRBV6-5A0A0K0K1A5 114 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 ZNF688P0C7X2 276 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 CFC1BP0CG36 223 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 CFC1P0CG37 223 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 SCGB1A1P11684 91 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 FOXI1Q12951 378 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 NFE4Q86UQ8 179 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 SLC25A29Q8N8R3 303 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 C9orf85Q96MD7 179 aa9.44□□□□□ -0.9
SHMT1-205ENST00000395684 M0QY20 66 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 GNLYP22749 145 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 CRYBG3Q68DQ2 2970 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 AVPP01185 164 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 C10orf99Q6UWK7 81 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 Q8N1Y9 231 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 SPG11Q96JI7 2443 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 MYO18BQ8IUG5 2567 aa9.43□□□□□ -0.9
SHMT1-205ENST00000395684 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.43□□□□□ -0.94e-9■■■■□ 22.2
SHMT1-205ENST00000395684 IGHV4-30-2A0A087WSY4 118 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 PTH2Q96A98 100 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 C1QTNF4Q9BXJ3 329 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 J3QQQ9 107 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 P0DMU3 169 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 FAM231AP0DMU4 169 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 FAM231CP0DMU5 169 aa9.42□□□□□ -0.9
SHMT1-205ENST00000395684 ZNF418Q8TF45 676 aaPredicted RBP9.42□□□□□ -0.9
SHMT1-205ENST00000395684 ZNF56Q15929 161 aa9.41□□□□□ -0.9
SHMT1-205ENST00000395684 A0A0J9YX75 114 aa9.41□□□□□ -0.9
SHMT1-205ENST00000395684 TCL1BO95988 128 aa9.41□□□□□ -0.9
SHMT1-205ENST00000395684 PSMB8P28062 276 aa9.41□□□□□ -0.9
SHMT1-205ENST00000395684 CCL19Q99731 98 aa9.41□□□□□ -0.9
SHMT1-205ENST00000395684 MSMBP08118 114 aa9.4□□□□□ -0.9
SHMT1-205ENST00000395684 ATP6V0E2Q8NHE4 81 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms