RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 A0A096LNJ9 63 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 TMEM238LA0A1B0GVL6 79 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 KLLNB2CW77 178 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 NHLRC4P0CG21 123 aaPredicted RBP7.49□□□□□ -1.21
VPS53-202ENST00000389040 KIR3DS1Q14943 382 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 MAJINQ3KP22 176 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 PSMG4Q5JS54 123 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 PET117Q6UWS5 81 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 KIR2DL5BQ8NHK3 375 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 DNAH3Q8TD57 4116 aa7.49□□□□□ -1.21
VPS53-202ENST00000389040 GAS8-AS1O95177 125 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 TNFRSF6BO95407 300 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 PRB2P02812 416 aaPredicted RBP7.48□□□□□ -1.21
VPS53-202ENST00000389040 ZNF688P0C7X2 276 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 ASIPP42127 132 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 DEFB131AP59861 70 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 ANXA2RQ3ZCQ2 193 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 DEFB125Q8N687 156 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 HBDP02042 147 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 IGLC3P0DOY3 106 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 MED14OSP0DP75 135 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 S100A4P26447 101 aaKnown RBP7.48□□□□□ -1.21
VPS53-202ENST00000389040 APOC4P55056 127 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 FOXI2Q6ZQN5 318 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 C2orf88Q9BSF0 95 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 UQCR10Q9UDW1 63 aa7.48□□□□□ -1.21
VPS53-202ENST00000389040 LINC01546A6NGU7 62 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 M0R143 59 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 MRPL52Q86TS9 123 aaKnown RBP7.47□□□□□ -1.21
VPS53-202ENST00000389040 STHQ8IWL8 128 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 ODF3Q96PU9 254 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 SNHG12Q9BXW3 62 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 SCRT2Q9NQ03 307 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 PHLDA3Q9Y5J5 127 aa7.47□□□□□ -1.21
VPS53-202ENST00000389040 A0A0J9YX75 114 aa7.46□□□□□ -1.21
VPS53-202ENST00000389040 H0Y8G0 127 aa7.46□□□□□ -1.21
VPS53-202ENST00000389040 M0R381 172 aa7.46□□□□□ -1.21
VPS53-202ENST00000389040 GATA1P15976 413 aaPredicted RBP7.46□□□□□ -1.21
VPS53-202ENST00000389040 LEPP41159 167 aa7.46□□□□□ -1.21
VPS53-202ENST00000389040 NUTF2P61970 127 aaKnown RBP7.46□□□□□ -1.21
VPS53-202ENST00000389040 LINC01545Q5VT33 79 aa7.46□□□□□ -1.21
VPS53-202ENST00000389040 MORN3Q6PF18 240 aaPredicted RBP7.46□□□□□ -1.21
VPS53-202ENST00000389040 NXT2Q9NPJ8 142 aaKnown RBP7.46□□□□□ -1.21
VPS53-202ENST00000389040 GNRH2O43555 120 aa7.46□□□□□ -1.22
VPS53-202ENST00000389040 TRAV26-2A0A0B4J265 109 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 RBMY1BA6NDE4 496 aaKnown RBP7.45□□□□□ -1.22
VPS53-202ENST00000389040 RBMY1EA6NEQ0 496 aaKnown RBP7.45□□□□□ -1.22
VPS53-202ENST00000389040 DUSP14O95147 198 aaKnown RBP7.45□□□□□ -1.22
VPS53-202ENST00000389040 RBMY1DP0C7P1 496 aaKnown RBP7.45□□□□□ -1.22
VPS53-202ENST00000389040 RNASE3P12724 160 aaKnown RBP7.45□□□□□ -1.22
VPS53-202ENST00000389040 HLA-DRB4P13762 266 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 FXYD7P58549 80 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 FAM159AQ6UWV7 190 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 Q6ZN92 141 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 NRACQ8N912 160 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 MRAP2Q96G30 205 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 HLA-DRB4X5D2U9 266 aa7.45□□□□□ -1.22
VPS53-202ENST00000389040 TRAV12-3A0A0B4J271 114 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 C7orf71A4D174 169 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 H3BMM0 161 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 SPRY2O43597 315 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 TRPT1Q86TN4 253 aaKnown RBP7.44□□□□□ -1.22
VPS53-202ENST00000389040 Q8N8P6 123 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 C1QTNF4Q9BXJ3 329 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 CSTL1Q9H114 145 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 DPH3P1Q9H4G8 78 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 ST20Q9HBF5 79 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 TP53TG1Q9Y2A0 90 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 A0A1B0GV90 55 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 hDV102S1A0JD36 115 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 PRSS47A8MTI9 375 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 HSBP1L1C9JCN9 74 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 NXPH4O95158 308 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 HNRNPA3P51991 378 aaKnown RBP7.44□□□□□ -1.22
VPS53-202ENST00000389040 WFDC10AQ9H1F0 79 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 ZMAT4Q9H898 229 aa7.44□□□□□ -1.22
VPS53-202ENST00000389040 IGLV2-18A0A075B6J9 118 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 A8MTW9 85 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 IGKV3-20P01619 116 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 FCER1GP30273 86 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 TSPOP30536 169 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 CDKN1BP46527 198 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 C14orf178Q8N769 122 aaPredicted RBP7.43□□□□□ -1.22
VPS53-202ENST00000389040 AP1S3Q96PC3 154 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 PMCHL2Q9BQD1 86 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 SPATA25Q9BR10 227 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 TM2D3Q9BRN9 247 aa7.43□□□□□ -1.22
VPS53-202ENST00000389040 TRAV12-2A0A075B6T6 113 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 SBSPONQ8IVN8 264 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 IFI27L1Q96BM0 104 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 SPINK13Q1W4C9 94 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 LGALS9BQ3B8N2 356 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 LGALS9CQ6DKI2 356 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 GOLT1BQ9Y3E0 138 aa7.42□□□□□ -1.22
VPS53-202ENST00000389040 KNCNA6PVL3 124 aa7.41□□□□□ -1.22
VPS53-202ENST00000389040 IGHV3-16A0A0C4DH30 117 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 MGPP08493 103 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 LAGE3Q14657 143 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 ZNF124Q15973 351 aa7.4□□□□□ -1.22
VPS53-202ENST00000389040 AMTNQ6UX39 209 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms