RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 VGLL1Q99990 258 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 MAP1LC3AQ9H492 121 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 SOCS3O14543 225 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 SAP30O75446 220 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 PF4P02776 101 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 IGLC6P0CF74 106 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 OR2K2Q8NGT1 345 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 MSRB1Q9NZV6 116 aa9.31□□□□□ -0.92
CIITA-202ENST00000381835 PRAC2D3DTV9 90 aa9.3□□□□□ -0.92
CIITA-202ENST00000381835 DCANP1Q8TF63 244 aa9.3□□□□□ -0.92
CIITA-202ENST00000381835 C20orf173Q96LM9 149 aa9.3□□□□□ -0.92
CIITA-202ENST00000381835 CITED1Q99966 193 aa9.3□□□□□ -0.92
CIITA-202ENST00000381835 VWFP04275 2813 aa9.3□□□□□ -0.92
CIITA-202ENST00000381835 NOTCH3Q9UM47 2321 aa9.29□□□□□ -0.92
CIITA-202ENST00000381835 LEPP41159 167 aa9.29□□□□□ -0.92
CIITA-202ENST00000381835 RNF185Q96GF1 192 aa9.29□□□□□ -0.92
CIITA-202ENST00000381835 FABP5P3A8MUU1 101 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 J3KRW8 73 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 TMEM61Q8N0U2 210 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 TRRAPQ9Y4A5 3859 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 A0A1W2PPM0 123 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 PRSS1P07477 247 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 FCER1GP30273 86 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 DEFB1P60022 68 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 DEFB114Q30KQ6 69 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 CD300EQ496F6 205 aaPredicted RBP9.28□□□□□ -0.92
CIITA-202ENST00000381835 ZNF575Q86XF7 245 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 STAB1Q9NY15 2570 aa9.28□□□□□ -0.92
CIITA-202ENST00000381835 GAS8-AS1O95177 125 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 TNFRSF6BO95407 300 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 ZNF688P0C7X2 276 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 EVI2AP22794 236 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 ID1P41134 155 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 ERCC8Q13216 396 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 MRPL53Q96EL3 112 aaKnown RBP9.27□□□□□ -0.92
CIITA-202ENST00000381835 NXT2Q9NPJ8 142 aaKnown RBP9.27□□□□□ -0.92
CIITA-202ENST00000381835 SPCS1Q9Y6A9 102 aa9.27□□□□□ -0.92
CIITA-202ENST00000381835 K7EQG2 157 aa9.27□□□□□ -0.93
CIITA-202ENST00000381835 SMIM13P0DJ93 91 aa9.27□□□□□ -0.93
CIITA-202ENST00000381835 GCSHP23434 173 aa9.27□□□□□ -0.93
CIITA-202ENST00000381835 COL6A5A8TX70 2615 aa9.27□□□□□ -0.93
CIITA-202ENST00000381835 AGRNO00468 2067 aa9.27□□□□□ -0.93
CIITA-202ENST00000381835 LINC01546A6NGU7 62 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 G3V4G9 280 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 FABP2P12104 132 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 RIPPLY3P57055 190 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 ODF1Q14990 250 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 PSMG4Q5JS54 123 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 SAMD13Q5VXD3 122 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 OR5A1Q8NGJ0 315 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 CNFNQ9BYD5 112 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 IGKV2D-26A0A0A0MRZ7 120 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 F6UB75 175 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 IGKCP01834 107 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 SNRPD3P62318 126 aaKnown RBP9.26□□□□□ -0.93
CIITA-202ENST00000381835 LINC00482Q8N8I6 264 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 HHLA3Q9XRX5 114 aa9.26□□□□□ -0.93
CIITA-202ENST00000381835 SAMD5Q5TGI4 173 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 TTTY13Q9BZ97 58 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 ZMAT4Q9H898 229 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 GATA1P15976 413 aaPredicted RBP9.25□□□□□ -0.93
CIITA-202ENST00000381835 NEGR1Q7Z3B1 354 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 TMEM158Q8WZ71 300 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 AGPAT4-IT1Q9H0P7 198 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 HIGD1BQ9P298 99 aa9.25□□□□□ -0.93
CIITA-202ENST00000381835 RBAKDNA6NC62 111 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 LINC01559Q495D7 138 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 TMEM78Q5T7P6 136 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 GTSCR1Q86UQ5 136 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 C3orf56Q8N813 242 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 OR10J6PQ8NGY7 276 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 CHAC1Q9BUX1 264 aa9.24□□□□□ -0.93
CIITA-202ENST00000381835 ATP5LO75964 103 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 FXYD2P54710 66 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 DPM2O94777 84 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 ZC2HC1BQ5TFG8 222 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 C9orf47Q6ZRZ4 202 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 Q8N8P6 123 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 SPATA3Q8NHX4 192 aa9.23□□□□□ -0.93
CIITA-202ENST00000381835 SPAG8Q99932 426 aaPredicted RBP9.22□□□□□ -0.93
CIITA-202ENST00000381835 TRBV25-1A0A075B6N4 114 aa9.22□□□□□ -0.93
CIITA-202ENST00000381835 TRAV25A0A0B4J276 109 aa9.22□□□□□ -0.93
CIITA-202ENST00000381835 TRAV2A0A0B4J234 112 aa9.21□□□□□ -0.93
CIITA-202ENST00000381835 IGKV3D-20A0A0C4DH25 116 aa9.21□□□□□ -0.93
CIITA-202ENST00000381835 IGLV1-51P01701 117 aa9.21□□□□□ -0.93
CIITA-202ENST00000381835 SMIM17P0DL12 118 aa9.21□□□□□ -0.93
CIITA-202ENST00000381835 DEFB131AP59861 70 aa9.21□□□□□ -0.93
CIITA-202ENST00000381835 ZNF256Q9Y2P7 627 aaPredicted RBP9.21□□□□□ -0.93
CIITA-202ENST00000381835 K7ERJ3 54 aa9.21□□□□□ -0.94
CIITA-202ENST00000381835 ZNF479Q96JC4 524 aa9.21□□□□□ -0.94
CIITA-202ENST00000381835 LINC00477Q96M19 166 aa9.21□□□□□ -0.94
CIITA-202ENST00000381835 IGLV2-18A0A075B6J9 118 aa9.2□□□□□ -0.94
CIITA-202ENST00000381835 IGKV3-20P01619 116 aa9.2□□□□□ -0.94
CIITA-202ENST00000381835 LAGE3Q14657 143 aa9.2□□□□□ -0.94
CIITA-202ENST00000381835 CEND1Q8N111 149 aa9.2□□□□□ -0.94
CIITA-202ENST00000381835 NHP2Q9NX24 153 aaKnown RBP9.2□□□□□ -0.94
CIITA-202ENST00000381835 RPL24P83731 157 aaKnown RBP9.2□□□□□ -0.94
CIITA-202ENST00000381835 MRPL35Q9NZE8 188 aaKnown RBP9.2□□□□□ -0.94
CIITA-202ENST00000381835 C11orf21Q9P2W6 132 aa9.2□□□□□ -0.94
CIITA-202ENST00000381835 TRAV26-2A0A0B4J265 109 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms