RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 CITED1Q99966 193 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 PIP4P1Q86T03 277 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 MUC4Q99102 2169 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 IGIPA6NJ69 53 aa11.96□□□□□ -0.49
CKAP4-201ENST00000378026 Q8N1Y9 231 aa11.96□□□□□ -0.49
CKAP4-201ENST00000378026 EEF1AKMT3Q96AZ1 226 aa11.96□□□□□ -0.49
CKAP4-201ENST00000378026 NDUFV3P56181 108 aaKnown RBP11.96□□□□□ -0.5
CKAP4-201ENST00000378026 MUSTN1Q8IVN3 82 aa11.96□□□□□ -0.5
CKAP4-201ENST00000378026 RNASE3P12724 160 aaKnown RBP11.95□□□□□ -0.5
CKAP4-201ENST00000378026 ADARB2-AS1A8MUL3 147 aa11.95□□□□□ -0.5
CKAP4-201ENST00000378026 IGHV3-33P01772 117 aa11.95□□□□□ -0.5
CKAP4-201ENST00000378026 SRD5A1P18405 259 aa11.95□□□□□ -0.5
CKAP4-201ENST00000378026 M0R1W7 72 aa11.95□□□□□ -0.5
CKAP4-201ENST00000378026 PAPPA-AS1Q5QFB9 102 aa11.95□□□□□ -0.5
CKAP4-201ENST00000378026 ZNF580Q9UK33 172 aa11.95□□□□□ -0.5
CKAP4-201ENST00000378026 RHODO00212 210 aa11.94□□□□□ -0.5
CKAP4-201ENST00000378026 UNQ9165/PRO28630Q6UXU0 137 aa11.94□□□□□ -0.5
CKAP4-201ENST00000378026 MRPL53Q96EL3 112 aaKnown RBP11.94□□□□□ -0.5
CKAP4-201ENST00000378026 COL12A1Q99715 3063 aa11.94□□□□□ -0.5
CKAP4-201ENST00000378026 ZFP36P26651 326 aaKnown RBP11.94□□□□□ -0.5
CKAP4-201ENST00000378026 SDHAF1A6NFY7 115 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 SUMO4Q6EEV6 95 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 TMEM219Q86XT9 240 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 LINC00477Q96M19 166 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 AMELXQ99217 191 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 TRBV12-3P01733 135 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 COL6A6A6NMZ7 2263 aa11.93□□□□□ -0.5
CKAP4-201ENST00000378026 SPTAN1Q13813 2472 aaKnown RBP11.93□□□□□ -0.5
CKAP4-201ENST00000378026 CENPVL3A0A0U1RRI6 287 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 C9orf139Q6ZV77 190 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 GAGE12JA6NER3 117 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 GAGE7O76087 117 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 GAGE12FP0CL80 117 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 GAGE12GP0CL81 117 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 GAGE12IP0CL82 117 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 IFITM1P13164 125 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 GAGE4Q13068 117 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 SMIM20Q8N5G0 67 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 TMEM263Q8WUH6 116 aaKnown RBP11.92□□□□□ -0.5
CKAP4-201ENST00000378026 HRNRQ86YZ3 2850 aaPredicted RBP11.92□□□□□ -0.5
CKAP4-201ENST00000378026 PRSS2P07478 247 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 NPC2P61916 151 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 C15orf53Q8NAA6 179 aa11.92□□□□□ -0.5
CKAP4-201ENST00000378026 ITLN2Q8WWU7 325 aaPredicted RBP11.92□□□□□ -0.5
CKAP4-201ENST00000378026 TRAV8-4A0A0B4J246 113 aa11.91□□□□□ -0.5
CKAP4-201ENST00000378026 EBI3Q14213 229 aa11.91□□□□□ -0.5
CKAP4-201ENST00000378026 Q8NA96 180 aa11.91□□□□□ -0.5
CKAP4-201ENST00000378026 LINC01620Q4KN68 170 aa11.91□□□□□ -0.5
CKAP4-201ENST00000378026 C3orf56Q8N813 242 aa11.91□□□□□ -0.5
CKAP4-201ENST00000378026 IGHV1-69DA0A0B4J2H0 117 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 VCYO14598 125 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 PPP1R17O96001 155 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 FAM159AQ6UWV7 190 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 IGHV3-11P01762 117 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 POLR2KP53803 58 aaKnown RBP11.9□□□□□ -0.5
CKAP4-201ENST00000378026 LINC00315P59091 139 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 ZNF876PQ49A33 203 aa11.9□□□□□ -0.5
CKAP4-201ENST00000378026 U3KQE9 123 aa11.9□□□□□ -0.51
CKAP4-201ENST00000378026 TRBV7-1A0A0A6YYK4 115 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 ATXN8Q156A1 80 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 ATRXP46100 2492 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 IGHV3OR16-10A0A075B7F0 116 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 HERV-K104P63124 156 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 TMEM141Q96I45 108 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 LENEPQ9Y5L5 61 aa11.89□□□□□ -0.51
CKAP4-201ENST00000378026 SAA4P35542 130 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 Q6ZSV7 163 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 ODF3Q96PU9 254 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 KIF25-AS1Q9Y6Z4 181 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 A0A0J9YXV3 536 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 SHISA2Q6UWI4 295 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 OVOL1O14753 267 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 ZNF56Q15929 161 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 MINOS1Q5TGZ0 78 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 SPXQ9BT56 116 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 MINOS1-NBL1R4GNA1 71 aa11.88□□□□□ -0.51
CKAP4-201ENST00000378026 TRAV12-3A0A0B4J271 114 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 TRBV7-9A0A0J9YWB2 115 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 TRIAP1O43715 76 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 IGKV3-20P01619 116 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 TIMM17AQ99595 171 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 SORL1Q92673 2214 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 C2orf82Q6UX34 121 aa11.87□□□□□ -0.51
CKAP4-201ENST00000378026 ZNF292O60281 2723 aa11.86□□□□□ -0.51
CKAP4-201ENST00000378026 TMEM223A0PJW6 202 aa11.86□□□□□ -0.51
CKAP4-201ENST00000378026 OOSP1A8MZH6 123 aa11.86□□□□□ -0.51
CKAP4-201ENST00000378026 H3BMM0 161 aa11.86□□□□□ -0.51
CKAP4-201ENST00000378026 UBE2WQ96B02 151 aa11.86□□□□□ -0.51
CKAP4-201ENST00000378026 LEPROTO15243 131 aa11.85□□□□□ -0.51
CKAP4-201ENST00000378026 DUX3Q96PT4 197 aa11.85□□□□□ -0.51
CKAP4-201ENST00000378026 IGHV4OR15-8A0A075B7B6 117 aa11.85□□□□□ -0.51
CKAP4-201ENST00000378026 A0A087WW49 117 aa11.85□□□□□ -0.51
CKAP4-201ENST00000378026 RNASE13Q5GAN3 156 aaKnown RBP11.85□□□□□ -0.51
CKAP4-201ENST00000378026 A0A0B4J2C4 111 aa11.84□□□□□ -0.51
CKAP4-201ENST00000378026 ZNF22P17026 224 aaPredicted RBP11.84□□□□□ -0.51
CKAP4-201ENST00000378026 CLEC2BQ92478 149 aa11.84□□□□□ -0.51
CKAP4-201ENST00000378026 P0DMU3 169 aa11.84□□□□□ -0.51
CKAP4-201ENST00000378026 FAM231AP0DMU4 169 aa11.84□□□□□ -0.51
CKAP4-201ENST00000378026 FAM231CP0DMU5 169 aa11.84□□□□□ -0.51
CKAP4-201ENST00000378026 RPL32P62910 135 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms