RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 A0A087WWL8 130 aa10.63□□□□□ -0.71
CD48-201ENST00000368045 ELANEP08246 267 aa10.63□□□□□ -0.71
CD48-201ENST00000368045 C11orf86A6NJI1 115 aa10.62□□□□□ -0.71
CD48-201ENST00000368045 TRPT1Q86TN4 253 aaKnown RBP10.62□□□□□ -0.71
CD48-201ENST00000368045 HOXA3O43365 443 aaPredicted RBP10.62□□□□□ -0.71
CD48-201ENST00000368045 NSUN5P1Q3KNT7 163 aa10.62□□□□□ -0.71
CD48-201ENST00000368045 TRGV11A0A075B6L2 103 aa10.61□□□□□ -0.71
CD48-201ENST00000368045 M0QY20 66 aa10.61□□□□□ -0.71
CD48-201ENST00000368045 SCGB1D4Q6XE38 83 aa10.61□□□□□ -0.71
CD48-201ENST00000368045 SELENOKQ9Y6D0 94 aa10.61□□□□□ -0.71
CD48-201ENST00000368045 SPTBN4Q9H254 2564 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 A0A096LNT2 108 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 ZNF876PQ49A33 203 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 Q8N1Y9 231 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 WFDC12Q8WWY7 111 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 MDFICQ9P1T7 246 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 ZNF256Q9Y2P7 627 aaPredicted RBP10.6□□□□□ -0.71
CD48-201ENST00000368045 NCOR2Q9Y618 2525 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 RPL39P62891 51 aaKnown RBP10.6□□□□□ -0.71
CD48-201ENST00000368045 ZNF56Q15929 161 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 CD300EQ496F6 205 aaPredicted RBP10.6□□□□□ -0.71
CD48-201ENST00000368045 UBE2E2Q96LR5 201 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 VPREB3Q9UKI3 123 aa10.6□□□□□ -0.71
CD48-201ENST00000368045 MUC4Q99102 2169 aa10.59□□□□□ -0.71
CD48-201ENST00000368045 CHD8Q9HCK8 2581 aa10.59□□□□□ -0.71
CD48-201ENST00000368045 UBE2D1P51668 147 aa10.59□□□□□ -0.71
CD48-201ENST00000368045 SYNJ2BPP57105 145 aa10.59□□□□□ -0.71
CD48-201ENST00000368045 RPL24P83731 157 aaKnown RBP10.59□□□□□ -0.71
CD48-201ENST00000368045 NFE4Q86UQ8 179 aa10.59□□□□□ -0.71
CD48-201ENST00000368045 EDA2RQ9HAV5 297 aa10.59□□□□□ -0.71
CD48-201ENST00000368045 SPANXB1Q9NS25 103 aaPredicted RBP10.59□□□□□ -0.71
CD48-201ENST00000368045 SPTAN1Q13813 2472 aaKnown RBP10.58□□□□□ -0.72
CD48-201ENST00000368045 ITPR1Q14643 2758 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 TRAV12-2A0A075B6T6 113 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 FSHBP01225 129 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 SRSF9Q13242 221 aaKnown RBP eCLIP10.58□□□□□ -0.72
CD48-201ENST00000368045 FAM74A4Q5TZK3 123 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 MORN3Q6PF18 240 aaPredicted RBP10.58□□□□□ -0.72
CD48-201ENST00000368045 C10orf99Q6UWK7 81 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 AMTNQ6UX39 209 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 PLEKHB2Q96CS7 222 aa10.58□□□□□ -0.72
CD48-201ENST00000368045 ASH1LQ9NR48 2969 aaKnown RBP10.58□□□□□ -0.72
CD48-201ENST00000368045 TEX48A0A1B0GUV7 120 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 J3QR89 54 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 SPINK13Q1W4C9 94 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 A0A0J9YY99 117 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 IGKV3-20P01619 116 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 HOXD3P31249 432 aaPredicted RBP10.57□□□□□ -0.72
CD48-201ENST00000368045 GAGE13Q4V321 117 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 ZNF702PQ9H963 129 aa10.57□□□□□ -0.72
CD48-201ENST00000368045 TRAV2A0A0B4J234 112 aa10.56□□□□□ -0.72
CD48-201ENST00000368045 A8MTW9 85 aa10.56□□□□□ -0.72
CD48-201ENST00000368045 I3L3M4 83 aa10.56□□□□□ -0.72
CD48-201ENST00000368045 LYRM7Q5U5X0 104 aa10.56□□□□□ -0.72
CD48-201ENST00000368045 Q6YL49 198 aa10.56□□□□□ -0.72
CD48-201ENST00000368045 PGPEP1Q9NXJ5 209 aa10.56□□□□□ -0.72
CD48-201ENST00000368045 H3BMG7 143 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 TGFAP01135 160 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 PIK3CD-AS1Q5SR53 167 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 TMEM170BQ5T4T1 132 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 C20orf203Q8NBC4 194 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 KLHL30-AS1Q8NEE0 82 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 ZNRF2Q8NHG8 242 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 MRPL16Q9NX20 251 aaKnown RBP10.55□□□□□ -0.72
CD48-201ENST00000368045 DOPEY1Q5JWR5 2465 aa10.55□□□□□ -0.72
CD48-201ENST00000368045 WFDC2Q14508 124 aa10.54□□□□□ -0.72
CD48-201ENST00000368045 SLC25A29Q8N8R3 303 aa10.54□□□□□ -0.72
CD48-201ENST00000368045 PRO0461Q9UI25 63 aa10.54□□□□□ -0.72
CD48-201ENST00000368045 J3QQQ9 107 aa10.54□□□□□ -0.72
CD48-201ENST00000368045 EMP1P54849 157 aa10.54□□□□□ -0.72
CD48-201ENST00000368045 LEPROTO15243 131 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 P0DMU3 169 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 FAM231AP0DMU4 169 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 FAM231CP0DMU5 169 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 LGALS3P17931 250 aaKnown RBP10.53□□□□□ -0.72
CD48-201ENST00000368045 CRYBA4P53673 196 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 TCTEX1D4Q5JR98 221 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 Q5PR19 223 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 NRGNQ92686 78 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 DLX4Q92988 240 aaPredicted RBP10.53□□□□□ -0.72
CD48-201ENST00000368045 PTH2Q96A98 100 aa10.53□□□□□ -0.72
CD48-201ENST00000368045 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.53□□□□□ -0.72
CD48-201ENST00000368045 TMEM223A0PJW6 202 aa10.52□□□□□ -0.72
CD48-201ENST00000368045 TSPEAR-AS2P59090 65 aa10.52□□□□□ -0.72
CD48-201ENST00000368045 AMELXQ99217 191 aa10.52□□□□□ -0.72
CD48-201ENST00000368045 PYGO1Q9Y3Y4 419 aa10.52□□□□□ -0.72
CD48-201ENST00000368045 PKD1L2Q7Z442 2459 aa10.52□□□□□ -0.73
CD48-201ENST00000368045 TSPAN13O95857 204 aa10.52□□□□□ -0.73
CD48-201ENST00000368045 IGHV3-30P01768 117 aa10.52□□□□□ -0.73
CD48-201ENST00000368045 IGHV3-30-5P0DP03 117 aa10.52□□□□□ -0.73
CD48-201ENST00000368045 SPAG8Q99932 426 aaPredicted RBP10.52□□□□□ -0.73
CD48-201ENST00000368045 SVEP1Q4LDE5 3571 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 AGRNO00468 2067 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 UBE2D3P61077 147 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 UBE2D2P62837 147 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 NDUFA11Q86Y39 141 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 Q8N2B8 174 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 DUX5Q96PT3 197 aa10.51□□□□□ -0.73
CD48-201ENST00000368045 IGLV4-3A0A075B6K6 122 aa10.5□□□□□ -0.73
CD48-201ENST00000368045 IGHV4-31P0DP07 118 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms