RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TRAV4A0A0B4J268 109 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 A0A0J9YY99 117 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 Q8N8P6 123 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 PYGO2Q9BRQ0 406 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 C2orf16Q68DN1 1984 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 OBSL1O75147 1896 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 J3QL48 77 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 YPEL3P61236 119 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-206ENST00000367253 NDPQ00604 133 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 HGFACQ04756 655 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 ZNF497Q6ZNH5 498 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 SERP2Q8N6R1 65 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 ARMS2P0C7Q2 107 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 TMEM256-PLSCR3K7ERE1 68 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 CFC1BP0CG36 223 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 CFC1P0CG37 223 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 IMUPQ9GZP8 106 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 FLVCR1-AS1Q8TAF5 88 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 ZNF492Q9P255 531 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 FAM215AQ9Y5M1 114 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 SERP1Q9Y6X1 66 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 GBF1Q92538 1859 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 F8VRH5 84 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 IGLV2-23P01705 113 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 FHL1Q13642 323 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 C4orf3Q8WVX3 66 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 FXYD5Q96DB9 178 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 PRR25Q96S07 402 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 TP53BP1Q12888 1972 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-206ENST00000367253 DEFB131BA0A096LNP1 70 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 BAALC-AS2P0C853 105 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 RNASE13Q5GAN3 156 aaKnown RBP6.79□□□□□ -1.32
SYNE1-206ENST00000367253 Q86TA4 180 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 DAND5Q8N907 189 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 Q8TAT8 98 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 GTSF1Q8WW33 167 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 MBD6Q96DN6 1003 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 KAAG1Q9UBP8 84 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 TRAV26-2A0A0B4J265 109 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 FAM222AQ5U5X8 452 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 CAMK2N2Q96S95 79 aa6.79□□□□□ -1.32
SYNE1-206ENST00000367253 LRCOL1A6NCL2 159 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 C4orf51C9J302 202 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 RPL18AQ02543 176 aaKnown RBP6.78□□□□□ -1.32
SYNE1-206ENST00000367253 LINC01620Q4KN68 170 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 MYLKQ15746 1914 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 IGKV1D-8A0A087WSZ0 117 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 J3QQQ9 107 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 DEFB135Q30KP9 77 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 IGHV7-4-1A0A0J9YVY3 117 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 FXYD2P54710 66 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 LYPD2Q6UXB3 125 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 LINC00322Q6ZN03 302 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-206ENST00000367253 MRPL35Q9NZE8 188 aaKnown RBP6.78□□□□□ -1.32
SYNE1-206ENST00000367253 TECTAO75443 2155 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 K7EMI3 77 aa6.78□□□□□ -1.32
SYNE1-206ENST00000367253 DAZ2Q13117 558 aaKnown RBP6.78□□□□□ -1.32
SYNE1-206ENST00000367253 DAZ4Q86SG3 579 aaKnown RBP6.78□□□□□ -1.32
SYNE1-206ENST00000367253 DAZ3Q9NR90 486 aaKnown RBP6.78□□□□□ -1.32
SYNE1-206ENST00000367253 SCN2AQ99250 2005 aa6.77□□□□□ -1.32
SYNE1-206ENST00000367253 PLAC8L1A1L4L8 177 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 PCP2Q8IVA1 136 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 ORMDL1Q9P0S3 153 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 DKK2Q9UBU2 259 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 PLXNA2O75051 1894 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 A0A087WWL8 130 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 IGKV1D-43A0A0B4J1Z2 117 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 IGKV1-9A0A0C4DH69 117 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 LY6G6EA0A0G2JKS1 128 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 YPEL4Q96NS1 127 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 PLA2G2EQ9NZK7 142 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 ALPK3Q96L96 1907 aa6.77□□□□□ -1.33
SYNE1-206ENST00000367253 ATP5EP56381 51 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-206ENST00000367253 IGHV4-31P0DP07 118 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 PSPHP1O15172 72 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 SPINK13Q1W4C9 94 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 FAM229AH3BQW9 127 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-206ENST00000367253 ARHGAP32A7KAX9 2087 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 PTPRSQ13332 1948 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 TEX22C9J3V5 150 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 H0YJW9 148 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 IGKV1-5P01602 117 aa6.76□□□□□ -1.33
SYNE1-206ENST00000367253 A0A0A6YYD4 124 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 PDE6HQ13956 83 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 Q8N1Y9 231 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 C8orf49Q96NF6 230 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 MED12LQ86YW9 2145 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 C10orf55Q5SWW7 151 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 SNURFQ9Y675 71 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 SDIM1Q6ZPB5 146 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 LINC00311Q8N616 119 aa6.75□□□□□ -1.33
SYNE1-206ENST00000367253 I3L3M4 83 aa6.74□□□□□ -1.33
SYNE1-206ENST00000367253 NXPH4O95158 308 aa6.74□□□□□ -1.33
SYNE1-206ENST00000367253 GFI1Q99684 422 aa6.74□□□□□ -1.33
SYNE1-206ENST00000367253 AGPAT4-IT1Q9H0P7 198 aa6.74□□□□□ -1.33
SYNE1-206ENST00000367253 MIFP14174 115 aa6.74□□□□□ -1.33
SYNE1-206ENST00000367253 GRNP28799 593 aaKnown RBP6.74□□□□□ -1.33
SYNE1-206ENST00000367253 SLURP1P55000 103 aa6.74□□□□□ -1.33
SYNE1-206ENST00000367253 TNFRSF13BO14836 293 aaPredicted RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms