RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PRR20CP86479 221 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PRR20DP86480 221 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PRR20BP86481 221 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PRR20AP86496 221 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 C15orf53Q8NAA6 179 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 FAM110AQ9BQ89 295 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PRAC2D3DTV9 90 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 ZNF843Q8N446 348 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 MED12LQ86YW9 2145 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PKIGQ9Y2B9 76 aa12.03□□□□□ -0.48
PTPRF-201ENST00000359947 ZNF493Q6ZR52 646 aa12.02□□□□□ -0.48
PTPRF-201ENST00000359947 MRPL36Q9P0J6 103 aaKnown RBP12.02□□□□□ -0.48
PTPRF-201ENST00000359947 TRACP01848 142 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 CEND1Q8N111 149 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 VSIG2Q96IQ7 327 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 IGKV2-24A0A0C4DH68 120 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 IFITM1P13164 125 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 SH2D6Q7Z4S9 175 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 MSRB1Q9NZV6 116 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 TNRC6AQ8NDV7 1962 aaKnown RBP12.02□□□□□ -0.49
PTPRF-201ENST00000359947 TM2D2Q9BX73 214 aa12.02□□□□□ -0.49
PTPRF-201ENST00000359947 UNQ9165/PRO28630Q6UXU0 137 aa12.01□□□□□ -0.49
PTPRF-201ENST00000359947 DAND5Q8N907 189 aa12.01□□□□□ -0.49
PTPRF-201ENST00000359947 GTSF1Q8WW33 167 aa12.01□□□□□ -0.49
PTPRF-201ENST00000359947 TRBV20-1A0A075B6N2 111 aa12.01□□□□□ -0.49
PTPRF-201ENST00000359947 C9orf47Q6ZRZ4 202 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 RNF152Q8N8N0 203 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 COX7B2Q8TF08 81 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 TRBV7-3A0A075B6L6 115 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 IGKV1-17P01599 117 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 LGALS9BQ3B8N2 356 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 LGALS9CQ6DKI2 356 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 TMEM61Q8N0U2 210 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 Q6ZWC4 215 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 SRCAPQ6ZRS2 3230 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 UTF1Q5T230 341 aa12□□□□□ -0.49
PTPRF-201ENST00000359947 IGHV4-31P0DP07 118 aa11.99□□□□□ -0.49
PTPRF-201ENST00000359947 PCDH15Q96QU1 1955 aa11.99□□□□□ -0.49
PTPRF-201ENST00000359947 IGLL1P15814 213 aa11.99□□□□□ -0.49
PTPRF-201ENST00000359947 COL4A3Q01955 1670 aa11.99□□□□□ -0.49
PTPRF-201ENST00000359947 RPL39P62891 51 aaKnown RBP11.98□□□□□ -0.49
PTPRF-201ENST00000359947 C9orf118A6NHY6 69 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 E7EUB6 86 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 C5orf47Q569G3 176 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 SIRPDQ9H106 197 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 ETDBQ3ZM63 59 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 SPANXA1Q9NS26 97 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 IGHG2P01859 326 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 LENEPQ9Y5L5 61 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 PLXNB1O43157 2135 aa11.98□□□□□ -0.49
PTPRF-201ENST00000359947 NDUFA1O15239 70 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 HIVEP3Q5T1R4 2406 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 IGLC2P0DOY2 106 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 IGLC3P0DOY3 106 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 ORMDL1Q9P0S3 153 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 PPDPFLQ8WWR9 84 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 TRAV26-1A0A087WT03 109 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 COX8AP10176 69 aa11.97□□□□□ -0.49
PTPRF-201ENST00000359947 MDFICQ9P1T7 246 aa11.96□□□□□ -0.49
PTPRF-201ENST00000359947 RBM3P98179 157 aaKnown RBP11.96□□□□□ -0.49
PTPRF-201ENST00000359947 HIGD2BQ4VC39 106 aa11.96□□□□□ -0.49
PTPRF-201ENST00000359947 GPHB5Q86YW7 130 aa11.96□□□□□ -0.49
PTPRF-201ENST00000359947 LINC01548A6NM66 108 aa11.96□□□□□ -0.49
PTPRF-201ENST00000359947 LOXL1Q08397 574 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-201ENST00000359947 MSMPQ1L6U9 139 aa11.96□□□□□ -0.49
PTPRF-201ENST00000359947 SND1-IT1Q9HBX3 110 aa11.96□□□□□ -0.49
PTPRF-201ENST00000359947 BAALC-AS2P0C853 105 aa11.96□□□□□ -0.5
PTPRF-201ENST00000359947 A0A0J9YXV3 536 aa11.96□□□□□ -0.5
PTPRF-201ENST00000359947 H3BMG7 143 aa11.96□□□□□ -0.5
PTPRF-201ENST00000359947 CEP192Q8TEP8 1941 aa11.96□□□□□ -0.5
PTPRF-201ENST00000359947 TEX22C9J3V5 150 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 FUSP35637 526 aaKnown RBP eCLIP11.95□□□□□ -0.53e-9■■■■■ 29.2
PTPRF-201ENST00000359947 NDUFA11Q86Y39 141 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 F8W1H4 67 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 LY6G6DO95868 133 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 ZFP2Q6ZN57 461 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 BVES-AS1Q5T3Y7 98 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 IL17DQ8TAD2 202 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 A6NDX4 124 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 HERV-K104P63124 156 aa11.95□□□□□ -0.5
PTPRF-201ENST00000359947 INSL3P51460 131 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 PATE2Q6UY27 113 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 MAP6D1Q9H9H5 199 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 LINC00482Q8N8I6 264 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 TNRC6BQ9UPQ9 1833 aaKnown RBP11.94□□□□□ -0.5
PTPRF-201ENST00000359947 K7EMI3 77 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 SPAG11BQ08648 103 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 OBSL1O75147 1896 aa11.94□□□□□ -0.5
PTPRF-201ENST00000359947 K7EP13 123 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 SPRY4Q9C004 299 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 NPSP0C0P6 89 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 CRYBA4P53673 196 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 C11orf52Q96A22 123 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 PCP2Q8IVA1 136 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 KRTAP27-1Q3LI81 207 aa11.93□□□□□ -0.5
PTPRF-201ENST00000359947 KIAA1549Q9HCM3 1950 aa11.92□□□□□ -0.5
PTPRF-201ENST00000359947 ANKRD29Q8N6D5 301 aa11.92□□□□□ -0.5
PTPRF-201ENST00000359947 K7EMT4 169 aa11.92□□□□□ -0.5
PTPRF-201ENST00000359947 TMEM263Q8WUH6 116 aaKnown RBP11.92□□□□□ -0.5
PTPRF-201ENST00000359947 M0R2N4 97 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms