RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 NUDT10Q8NFP7 164 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 NUDT11Q96G61 164 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 SMIM7Q9BQ49 75 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 TPPP3Q9BW30 176 aa11.65□□□□□ -0.54
CLN3-203ENST00000357806 DNAH10Q8IVF4 4471 aa11.64□□□□□ -0.55
CLN3-203ENST00000357806 CRYGDP07320 174 aa11.64□□□□□ -0.55
CLN3-203ENST00000357806 SRP19P09132 144 aaKnown RBP11.64□□□□□ -0.55
CLN3-203ENST00000357806 C1orf134Q5TEV5 83 aa11.64□□□□□ -0.55
CLN3-203ENST00000357806 RNASE7Q9H1E1 156 aaKnown RBP11.64□□□□□ -0.55
CLN3-203ENST00000357806 LY96Q9Y6Y9 160 aa11.64□□□□□ -0.55
CLN3-203ENST00000357806 MUC21A0A0G2JKD1 596 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 MUC21A0A140T8X8 626 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 A0A1W2PPQ1 181 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 ZNF727A8MUV8 499 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 C14orf178Q8N769 122 aaPredicted RBP11.63□□□□□ -0.55
CLN3-203ENST00000357806 AP1S3Q96PC3 154 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 RPP21Q9H633 154 aaKnown RBP11.63□□□□□ -0.55
CLN3-203ENST00000357806 DNAH2Q9P225 4427 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 F2Z2F3 143 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 RTL8CO15255 209 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 TIRAPP58753 221 aa11.63□□□□□ -0.55
CLN3-203ENST00000357806 SSTP61278 116 aa11.62□□□□□ -0.55
CLN3-203ENST00000357806 CACNG7P62955 275 aa11.62□□□□□ -0.55
CLN3-203ENST00000357806 ZNF56Q15929 161 aa11.62□□□□□ -0.55
CLN3-203ENST00000357806 ATP6V0E2Q8NHE4 81 aa11.62□□□□□ -0.55
CLN3-203ENST00000357806 GAGE12JA6NER3 117 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 SMIM17P0DL12 118 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 LINC00694P0DN24 101 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 GAGE1Q13065 139 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 GAGE4Q13068 117 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 GAGE5Q13069 117 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 PEA15Q15121 130 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 GAGE13Q4V321 117 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 FAM231DQ6ZW35 169 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 C6orf223Q8N319 242 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 KRTAP1-5Q9BYS1 174 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 SMDT1Q9H4I9 107 aa11.61□□□□□ -0.55
CLN3-203ENST00000357806 RAB4BP61018 213 aa11.6□□□□□ -0.55
CLN3-203ENST00000357806 LINC01551Q86U37 167 aa11.6□□□□□ -0.55
CLN3-203ENST00000357806 WFDC10BQ8IUB3 73 aa11.6□□□□□ -0.55
CLN3-203ENST00000357806 GTSF1LQ9H1H1 148 aa11.6□□□□□ -0.55
CLN3-203ENST00000357806 EPPK1P58107 5090 aaKnown RBP11.6□□□□□ -0.55
CLN3-203ENST00000357806 TRBV10-1A0A0K0K1A3 114 aa11.59□□□□□ -0.55
CLN3-203ENST00000357806 PRSS29PA6NIE9 313 aa11.59□□□□□ -0.55
CLN3-203ENST00000357806 GATCO43716 136 aaKnown RBP11.59□□□□□ -0.55
CLN3-203ENST00000357806 CTRLP40313 264 aa11.59□□□□□ -0.55
CLN3-203ENST00000357806 ERVFC1-1P60608 527 aa11.59□□□□□ -0.55
CLN3-203ENST00000357806 FAM74A3Q4VXF1 159 aa11.59□□□□□ -0.55
CLN3-203ENST00000357806 LYZL1Q6UWQ5 148 aa11.59□□□□□ -0.55
CLN3-203ENST00000357806 RAB14P61106 215 aa11.58□□□□□ -0.56
CLN3-203ENST00000357806 Q9UF83 564 aa11.58□□□□□ -0.56
CLN3-203ENST00000357806 TRAV9-2A0A087WT02 112 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 TRAV8-6A0A0B4J262 113 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 TRGC1P0CF51 173 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 BTF3P20290 206 aaKnown RBP11.57□□□□□ -0.56
CLN3-203ENST00000357806 RPL36AP83881 106 aaKnown RBP11.57□□□□□ -0.56
CLN3-203ENST00000357806 CT83Q5H943 113 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 OR10J3Q5JRS4 329 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 LELP1Q5T871 98 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 RPL36ALQ969Q0 106 aaKnown RBP11.57□□□□□ -0.56
CLN3-203ENST00000357806 FAT2Q9NYQ8 4349 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 A8MWL6 223 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 F5H697 171 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 K7EP13 123 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 DNAH10OSP0CZ25 163 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 EVI2AP22794 236 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 SRSF3P84103 164 aaKnown RBP11.57□□□□□ -0.56
CLN3-203ENST00000357806 WDR73Q6P4I2 378 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 CNFNQ9BYD5 112 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 MSRB1Q9NZV6 116 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 KIF25-AS1Q9Y6Z4 181 aa11.57□□□□□ -0.56
CLN3-203ENST00000357806 TRBV7-3A0A075B6L6 115 aa11.56□□□□□ -0.56
CLN3-203ENST00000357806 IGHV3-38A0A0C4DH36 116 aa11.56□□□□□ -0.56
CLN3-203ENST00000357806 C9JQL5 133 aa11.56□□□□□ -0.56
CLN3-203ENST00000357806 NTF3P20783 257 aa11.56□□□□□ -0.56
CLN3-203ENST00000357806 TMEM241Q24JQ0 296 aa11.56□□□□□ -0.56
CLN3-203ENST00000357806 MGPP08493 103 aa11.55□□□□□ -0.56
CLN3-203ENST00000357806 OR10G8Q8NGN5 311 aa11.55□□□□□ -0.56
CLN3-203ENST00000357806 GTSF1Q8WW33 167 aa11.55□□□□□ -0.56
CLN3-203ENST00000357806 OSTCQ9NRP0 149 aa11.55□□□□□ -0.56
CLN3-203ENST00000357806 NAT8Q9UHE5 227 aa11.55□□□□□ -0.56
CLN3-203ENST00000357806 HECTD4Q9Y4D8 3996 aa11.55□□□□□ -0.56
CLN3-203ENST00000357806 A0A087WWC5 75 aa11.54□□□□□ -0.56
CLN3-203ENST00000357806 LINC00315P59091 139 aa11.54□□□□□ -0.56
CLN3-203ENST00000357806 TWIST1Q15672 202 aa11.54□□□□□ -0.56
CLN3-203ENST00000357806 C10orf126Q8N4M7 172 aa11.54□□□□□ -0.56
CLN3-203ENST00000357806 C15orf54Q8N8G6 183 aa11.54□□□□□ -0.56
CLN3-203ENST00000357806 DPH3P1Q9H4G8 78 aa11.54□□□□□ -0.56
CLN3-203ENST00000357806 UBE2D3P61077 147 aa11.53□□□□□ -0.56
CLN3-203ENST00000357806 RPL23P62829 140 aaKnown RBP11.53□□□□□ -0.56
CLN3-203ENST00000357806 UBE2D2P62837 147 aa11.53□□□□□ -0.56
CLN3-203ENST00000357806 LINC01556Q5JQF7 62 aa11.53□□□□□ -0.56
CLN3-203ENST00000357806 NEXN-AS1Q8NBZ9 246 aa11.53□□□□□ -0.56
CLN3-203ENST00000357806 ISOC2Q96AB3 205 aa11.53□□□□□ -0.56
CLN3-203ENST00000357806 DNAH17Q9UFH2 4485 aa11.53□□□□□ -0.56
CLN3-203ENST00000357806 H7C1H1 209 aa11.52□□□□□ -0.56
CLN3-203ENST00000357806 ADIRFQ15847 76 aa11.52□□□□□ -0.56
CLN3-203ENST00000357806 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.52□□□□□ -0.56
CLN3-203ENST00000357806 A0A1B0GVY2 172 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 TSKUQ8WUA8 353 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms