RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 H3BNG1 76 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 SCGB3A1Q96QR1 104 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 ZNF324O75467 553 aaPredicted RBP6.65□□□□□ -1.34
UPF2-202ENST00000357604 CFAP126Q5VTH2 177 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 FAM104BQ5XKR9 115 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 RNASE8Q8TDE3 154 aaKnown RBP6.65□□□□□ -1.34
UPF2-202ENST00000357604 V9GYV3 84 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 A0A096LPF7 62 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 SNAI2O43623 268 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 SUMO4Q6EEV6 95 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 AMTNQ6UX39 209 aa6.65□□□□□ -1.34
UPF2-202ENST00000357604 RASL10AQ92737 203 aa6.65□□□□□ -1.35
UPF2-202ENST00000357604 VCX2Q9H322 139 aa6.65□□□□□ -1.35
UPF2-202ENST00000357604 COPS9Q8WXC6 57 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 H0Y8G0 127 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 SIVA1O15304 175 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 SRSF3P84103 164 aaKnown RBP6.64□□□□□ -1.35
UPF2-202ENST00000357604 IFITM2Q01629 132 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 TMEM141Q96I45 108 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 C1orf43Q9BWL3 253 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 D6R8Y8 96 aa6.64□□□□□ -1.35
UPF2-202ENST00000357604 SPG11Q96JI7 2443 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 TRAV8-3A0A0A6YYJ7 113 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 C19orf71A6NCJ1 209 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 K7EP13 123 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 IGLV2-11P01706 119 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 TEX43Q6ZNM6 134 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 FAM19A4Q96LR4 140 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 IGKV3D-20A0A0C4DH25 116 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 SDHAF1A6NFY7 115 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 K7EN84 100 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 GAGE6Q13070 117 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 Q6ZTC4 211 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 TMEM70Q9BUB7 260 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 COX8CQ7Z4L0 72 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 Q8N8P6 123 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 DMXL1Q9Y485 3027 aa6.63□□□□□ -1.35
UPF2-202ENST00000357604 CHCHD1Q96BP2 118 aaKnown RBP6.63□□□□□ -1.35
UPF2-202ENST00000357604 HECTD1Q9ULT8 2610 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 IGKV2D-24A0A075B6R9 120 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 A8MTW9 85 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.62□□□□□ -1.35
UPF2-202ENST00000357604 TNFRSF6BO95407 300 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 ANGP03950 147 aaKnown RBP6.62□□□□□ -1.35
UPF2-202ENST00000357604 ZNF25P17030 456 aaPredicted RBP6.62□□□□□ -1.35
UPF2-202ENST00000357604 ZNF80P51504 273 aaPredicted RBP6.62□□□□□ -1.35
UPF2-202ENST00000357604 X6R8D5 127 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 CRYGDP07320 174 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 SUMO2P61956 95 aaKnown RBP6.62□□□□□ -1.35
UPF2-202ENST00000357604 LELP1Q5T871 98 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 USP9XQ93008 2570 aaPredicted RBP6.62□□□□□ -1.35
UPF2-202ENST00000357604 ZNF479Q96JC4 524 aa6.62□□□□□ -1.35
UPF2-202ENST00000357604 CRYBA4P53673 196 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 NOTCH2Q04721 2471 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 IFITM10A6NMD0 228 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 IGHV3-30P01768 117 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 IGHV3-33P01772 117 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 IGHV3-30-3P0DP02 117 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 IGHV3-30-5P0DP03 117 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 GATA1P15976 413 aaPredicted RBP6.61□□□□□ -1.35
UPF2-202ENST00000357604 AMN1Q8IY45 258 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 Q8NAQ8 132 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 PLA2G2EQ9NZK7 142 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 CCDC168Q8NDH2 2452 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 POM121L12Q8N7R1 296 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 CHCHD7Q9BUK0 85 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 MLST8Q9BVC4 326 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 CCL25O15444 150 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 SNCGO76070 127 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 PRR9Q5T870 116 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 SPANXA1Q9NS26 97 aa6.61□□□□□ -1.35
UPF2-202ENST00000357604 IGLC6P0CF74 106 aa6.6□□□□□ -1.35
UPF2-202ENST00000357604 C12orf74Q32Q52 190 aa6.6□□□□□ -1.35
UPF2-202ENST00000357604 MRPL51Q4U2R6 128 aaKnown RBP6.6□□□□□ -1.35
UPF2-202ENST00000357604 SSBP4Q9BWG4 385 aaPredicted RBP6.6□□□□□ -1.35
UPF2-202ENST00000357604 ZNF561-AS1K7EIQ3 104 aa6.6□□□□□ -1.35
UPF2-202ENST00000357604 CRXO43186 299 aaPredicted RBP6.6□□□□□ -1.35
UPF2-202ENST00000357604 Q6ZQT7 251 aa6.6□□□□□ -1.35
UPF2-202ENST00000357604 IGHV3-38A0A0C4DH36 116 aa6.6□□□□□ -1.35
UPF2-202ENST00000357604 HBDP02042 147 aa6.59□□□□□ -1.35
UPF2-202ENST00000357604 RBMY1A1P0DJD3 496 aaKnown RBP6.59□□□□□ -1.35
UPF2-202ENST00000357604 RBMY1CP0DJD4 496 aa6.59□□□□□ -1.35
UPF2-202ENST00000357604 RBMY1FQ15415 496 aaKnown RBP6.59□□□□□ -1.35
UPF2-202ENST00000357604 SLC25A29Q8N8R3 303 aa6.59□□□□□ -1.35
UPF2-202ENST00000357604 VSIG2Q96IQ7 327 aa6.59□□□□□ -1.35
UPF2-202ENST00000357604 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.59□□□□□ -1.36
UPF2-202ENST00000357604 MRPS16Q9Y3D3 137 aaKnown RBP6.59□□□□□ -1.36
UPF2-202ENST00000357604 C18orf15Q96N68 181 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 LINC00587B1AMM8 73 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 SCGB1D1O95968 90 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 C1orf134Q5TEV5 83 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 SMIM2Q9BVW6 85 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 F8P00451 2351 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 FOXA3P55318 350 aaPredicted RBP6.58□□□□□ -1.36
UPF2-202ENST00000357604 USP34Q70CQ2 3546 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 UBE2WQ96B02 151 aa6.58□□□□□ -1.36
UPF2-202ENST00000357604 TRBV24-1A0A075B6N3 115 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 CIRBPQ14011 172 aaKnown RBP6.57□□□□□ -1.36
UPF2-202ENST00000357604 TRAV26-2A0A0B4J265 109 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 FHL2Q14192 279 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms