RNA–Protein interactions for RNA: ENST00000345617.7

HDAC4-201, Transcript of histone deacetylase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC4, Length 8,976 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-201ENST00000345617 BPESC1Q9GZL8 116 aa15.24■□□□□ 0.03
HDAC4-201ENST00000345617 TRBV12-3P01733 135 aa15.24■□□□□ 0.03
HDAC4-201ENST00000345617 CTRLP40313 264 aa15.24■□□□□ 0.03
HDAC4-201ENST00000345617 IGKV1-39P01597 117 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 IGKV1D-39P04432 117 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 CGB3P0DN86 165 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 LHBP01229 141 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 COL5A1P20908 1838 aaPredicted RBP15.23■□□□□ 0.03
HDAC4-201ENST00000345617 TRAV4A0A0B4J268 109 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 BUB3O43684 328 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 TLN2Q9Y4G6 2542 aa15.23■□□□□ 0.03
HDAC4-201ENST00000345617 CFHR3Q02985 330 aa15.22■□□□□ 0.03
HDAC4-201ENST00000345617 IGF2BP2-AS1Q96M15 143 aa15.22■□□□□ 0.03
HDAC4-201ENST00000345617 TRAV26-1A0A087WT03 109 aa15.22■□□□□ 0.03
HDAC4-201ENST00000345617 TRBV7-3A0A075B6L6 115 aa15.22■□□□□ 0.03
HDAC4-201ENST00000345617 IGHV3-38A0A0C4DH36 116 aa15.22■□□□□ 0.03
HDAC4-201ENST00000345617 IGKV3D-7A0A0C4DH55 119 aa15.22■□□□□ 0.03
HDAC4-201ENST00000345617 HIST2H2BCQ6DN03 193 aa15.21■□□□□ 0.03
HDAC4-201ENST00000345617 ZNF491Q8N8L2 437 aa15.21■□□□□ 0.03
HDAC4-201ENST00000345617 Q0VFX4 171 aa15.21■□□□□ 0.03
HDAC4-201ENST00000345617 VWCEQ96DN2 955 aa15.21■□□□□ 0.03
HDAC4-201ENST00000345617 CGB7P0DN87 165 aa15.21■□□□□ 0.03
HDAC4-201ENST00000345617 Q8NFD4 153 aa15.21■□□□□ 0.03
HDAC4-201ENST00000345617 FXYD2P54710 66 aa15.2■□□□□ 0.02
HDAC4-201ENST00000345617 DKK4Q9UBT3 224 aa15.2■□□□□ 0.02
HDAC4-201ENST00000345617 SPATA12Q7Z6I5 190 aa15.2■□□□□ 0.02
HDAC4-201ENST00000345617 RNF144BQ7Z419 303 aa15.2■□□□□ 0.02
HDAC4-201ENST00000345617 WIPF3A6NGB9 483 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 WFDC2Q14508 124 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 RS1O15537 224 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 DEFB121Q5J5C9 76 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 ZNF503Q96F45 646 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 UPK3BQ9BT76 320 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 COL8A2P25067 703 aa15.19■□□□□ 0.02
HDAC4-201ENST00000345617 TRBV6-1A0A0K0K1D8 114 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 E7EQL1 145 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 GP9P14770 177 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 NDUFA11Q86Y39 141 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 ZMAT4Q9H898 229 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 FAM236DA0A1B0GTK5 79 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 FAM236CP0DP71 79 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 DEFB105AQ8NG35 78 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 IGLV3-1P01715 115 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 TIRAPP58753 221 aa15.18■□□□□ 0.02
HDAC4-201ENST00000345617 RPL18AQ02543 176 aaKnown RBP15.18■□□□□ 0.02
HDAC4-201ENST00000345617 RNASE13Q5GAN3 156 aaKnown RBP15.17■□□□□ 0.02
HDAC4-201ENST00000345617 Q6ZS92 163 aa15.17■□□□□ 0.02
HDAC4-201ENST00000345617 C20orf173Q96LM9 149 aa15.17■□□□□ 0.02
HDAC4-201ENST00000345617 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.17■□□□□ 0.02
HDAC4-201ENST00000345617 IGKV2-29A2NJV5 120 aaPredicted RBP15.17■□□□□ 0.02
HDAC4-201ENST00000345617 ODF1Q14990 250 aa15.17■□□□□ 0.02
HDAC4-201ENST00000345617 NOP10Q9NPE3 64 aaKnown RBP15.16■□□□□ 0.02
HDAC4-201ENST00000345617 UBE2AP49459 152 aa15.16■□□□□ 0.02
HDAC4-201ENST00000345617 C3orf22Q8N5N4 141 aa15.16■□□□□ 0.02
HDAC4-201ENST00000345617 KIR2DL5BQ8NHK3 375 aa15.16■□□□□ 0.02
HDAC4-201ENST00000345617 NDUFA1O15239 70 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 C3orf56Q8N813 242 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 MRPS36P82909 103 aaKnown RBP15.15■□□□□ 0.02
HDAC4-201ENST00000345617 DIRC1Q969H9 104 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 C4orf48Q5BLP8 95 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 CAMK2N2Q96S95 79 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 G3V318 75 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 CDPF1Q6NVV7 123 aa15.15■□□□□ 0.02
HDAC4-201ENST00000345617 F8P00451 2351 aa15.14■□□□□ 0.01
HDAC4-201ENST00000345617 IGKV2D-24A0A075B6R9 120 aa15.14■□□□□ 0.01
HDAC4-201ENST00000345617 IGLV1-44P01699 117 aa15.14■□□□□ 0.01
HDAC4-201ENST00000345617 LOXP28300 417 aaPredicted RBP15.14■□□□□ 0.01
HDAC4-201ENST00000345617 IGFL3Q6UXB1 125 aa15.14■□□□□ 0.01
HDAC4-201ENST00000345617 RPL39LQ96EH5 51 aaKnown RBP15.13■□□□□ 0.01
HDAC4-201ENST00000345617 MIAQ16674 131 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 NPBQ8NG41 125 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 TLN1Q9Y490 2541 aaKnown RBP15.13■□□□□ 0.01
HDAC4-201ENST00000345617 TDRG1Q3Y452 100 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 FGF23Q9GZV9 251 aaPredicted RBP15.13■□□□□ 0.01
HDAC4-201ENST00000345617 U3KQE9 123 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 ANKRD39Q53RE8 183 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 C9orf47Q6ZRZ4 202 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 TM2D2Q9BX73 214 aa15.13■□□□□ 0.01
HDAC4-201ENST00000345617 CLPSL2Q6UWE3 100 aa15.12■□□□□ 0.01
HDAC4-201ENST00000345617 AGPAT4-IT1Q9H0P7 198 aa15.12■□□□□ 0.01
HDAC4-201ENST00000345617 IGLV3-9A0A075B6K5 115 aa15.12■□□□□ 0.01
HDAC4-201ENST00000345617 ZFHX2Q9C0A1 2572 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-201ENST00000345617 WDR86Q86TI4 376 aa15.11■□□□□ 0.01
HDAC4-201ENST00000345617 VPREB3Q9UKI3 123 aa15.11■□□□□ 0.01
HDAC4-201ENST00000345617 FN1P02751 2386 aaKnown RBP15.11■□□□□ 0.01
HDAC4-201ENST00000345617 SETD2Q9BYW2 2564 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-201ENST00000345617 C5orf24Q7Z6I8 188 aa15.11■□□□□ 0.01
HDAC4-201ENST00000345617 LECT2O14960 151 aa15.1■□□□□ 0.01
HDAC4-201ENST00000345617 HOXB4P17483 251 aaPredicted RBP15.1■□□□□ 0.01
HDAC4-201ENST00000345617 SPTSSBQ8NFR3 76 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 CRIPAKQ8N1N5 446 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 USP17L23D6RBM5 183 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 GNRH2O43555 120 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 NDUFA7O95182 113 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 HIST2H2BDQ6DRA6 164 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 C16orf54Q6UWD8 224 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 H7C423 109 aa15.09■□□□□ 0.01
HDAC4-201ENST00000345617 IGHV4-28A0A0C4DH34 117 aa15.08■□□□□ 0.01
HDAC4-201ENST00000345617 TEX22C9J3V5 150 aa15.08■□□□□ 0.01
HDAC4-201ENST00000345617 RUSC1-AS1Q66K80 236 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms