RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 PRR20EP86478 221 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 PRR20CP86479 221 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 PRR20DP86480 221 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 PRR20BP86481 221 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 PRR20AP86496 221 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 Q6P435 159 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 ZNF833PQ6ZTB9 187 aa13.96□□□□□ -0.17
SMAD4-201ENST00000342988 TNS1Q9HBL0 1735 aaKnown RBP13.95□□□□□ -0.18
SMAD4-201ENST00000342988 IGKV1D-12P01611 117 aa13.95□□□□□ -0.18
SMAD4-201ENST00000342988 CSRP1P21291 193 aaKnown RBP13.95□□□□□ -0.18
SMAD4-201ENST00000342988 SHISA3A0PJX4 238 aa13.95□□□□□ -0.18
SMAD4-201ENST00000342988 HIVEP2P31629 2446 aa13.95□□□□□ -0.18
SMAD4-201ENST00000342988 IGLV10-54A0A075B6I4 117 aa13.95□□□□□ -0.18
SMAD4-201ENST00000342988 NCR3O14931 201 aa13.95□□□□□ -0.18
SMAD4-201ENST00000342988 G3V4G9 280 aa13.95□□□□□ -0.18
SMAD4-201ENST00000342988 GGNQ86UU5 652 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 RNF223E7ERA6 249 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 ELANEP08246 267 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 NDUFV3P56181 108 aaKnown RBP13.94□□□□□ -0.18
SMAD4-201ENST00000342988 IGKV1D-8A0A087WSZ0 117 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 PRR30Q53SZ7 412 aaPredicted RBP13.94□□□□□ -0.18
SMAD4-201ENST00000342988 SERP2Q8N6R1 65 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 CYYR1Q96J86 154 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 Q96MF0 132 aa13.94□□□□□ -0.18
SMAD4-201ENST00000342988 PRYO14603 147 aa13.93□□□□□ -0.18
SMAD4-201ENST00000342988 K7EM74 188 aa13.93□□□□□ -0.18
SMAD4-201ENST00000342988 LECT2O14960 151 aa13.93□□□□□ -0.18
SMAD4-201ENST00000342988 HHLA3Q9XRX5 114 aa13.93□□□□□ -0.18
SMAD4-201ENST00000342988 HIST2H2BDQ6DRA6 164 aa13.93□□□□□ -0.18
SMAD4-201ENST00000342988 Q8N1Y9 231 aa13.93□□□□□ -0.18
SMAD4-201ENST00000342988 F8W735 103 aaPredicted RBP13.93□□□□□ -0.18
SMAD4-201ENST00000342988 ADAMTS20P59510 1910 aa13.92□□□□□ -0.18
SMAD4-201ENST00000342988 MLST8Q9BVC4 326 aa13.92□□□□□ -0.18
SMAD4-201ENST00000342988 CENPVL3A0A0U1RRI6 287 aa13.92□□□□□ -0.18
SMAD4-201ENST00000342988 MST1P26927 711 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 IGKV1D-17A0A075B6S4 117 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 IGKV1-27A0A075B6S5 117 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 IGLC1P0CG04 106 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 IGHV4-59P01825 116 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 PRR4Q16378 134 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 C1orf195Q5TG92 126 aa13.91□□□□□ -0.18
SMAD4-201ENST00000342988 WISP1O95388 367 aa13.9□□□□□ -0.18
SMAD4-201ENST00000342988 HIGD1BQ9P298 99 aa13.9□□□□□ -0.18
SMAD4-201ENST00000342988 RUSC1-AS1Q66K80 236 aa13.9□□□□□ -0.18
SMAD4-201ENST00000342988 WFDC10BQ8IUB3 73 aa13.9□□□□□ -0.19
SMAD4-201ENST00000342988 IGKV2D-26A0A0A0MRZ7 120 aa13.89□□□□□ -0.19
SMAD4-201ENST00000342988 PCP2Q8IVA1 136 aa13.89□□□□□ -0.19
SMAD4-201ENST00000342988 CPAMD8Q8IZJ3 1885 aa13.88□□□□□ -0.19
SMAD4-201ENST00000342988 IGKV1-12A0A0C4DH73 117 aa13.88□□□□□ -0.19
SMAD4-201ENST00000342988 TEX49A0A1B0GTD5 131 aa13.88□□□□□ -0.19
SMAD4-201ENST00000342988 IGLV3-19P01714 112 aa13.88□□□□□ -0.19
SMAD4-201ENST00000342988 Q8N9L7 120 aa13.88□□□□□ -0.19
SMAD4-201ENST00000342988 SPAG11BQ08648 103 aa13.87□□□□□ -0.19
SMAD4-201ENST00000342988 FXYD5Q96DB9 178 aa13.87□□□□□ -0.19
SMAD4-201ENST00000342988 IGHV3-30P01768 117 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 IGHV3-33P01772 117 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 IGHV3-30-3P0DP02 117 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 IGHV3-30-5P0DP03 117 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 C9orf85Q96MD7 179 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 ZNF747Q9BV97 191 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 VPREB3Q9UKI3 123 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 PNRC2Q9NPJ4 139 aaKnown RBP13.86□□□□□ -0.19
SMAD4-201ENST00000342988 GATA1P15976 413 aaPredicted RBP13.86□□□□□ -0.19
SMAD4-201ENST00000342988 WDR86Q86TI4 376 aa13.86□□□□□ -0.19
SMAD4-201ENST00000342988 TTC28Q96AY4 2481 aa13.85□□□□□ -0.19
SMAD4-201ENST00000342988 LYPD2Q6UXB3 125 aa13.85□□□□□ -0.19
SMAD4-201ENST00000342988 RNF138Q8WVD3 245 aa13.85□□□□□ -0.19
SMAD4-201ENST00000342988 COL8A2P25067 703 aa13.85□□□□□ -0.19
SMAD4-201ENST00000342988 C16orf54Q6UWD8 224 aa13.85□□□□□ -0.19
SMAD4-201ENST00000342988 PIK3CD-AS1Q5SR53 167 aa13.84□□□□□ -0.19
SMAD4-201ENST00000342988 WIPF3A6NGB9 483 aa13.84□□□□□ -0.19
SMAD4-201ENST00000342988 C20orf197Q8N268 126 aa13.84□□□□□ -0.19
SMAD4-201ENST00000342988 UBE2D4Q9Y2X8 147 aa13.84□□□□□ -0.19
SMAD4-201ENST00000342988 LYPD3O95274 346 aa13.84□□□□□ -0.19
SMAD4-201ENST00000342988 RNF185Q96GF1 192 aa13.84□□□□□ -0.19
SMAD4-201ENST00000342988 TGFBR3LH3BV60 316 aa13.83□□□□□ -0.2
SMAD4-201ENST00000342988 PIFOQ8TCI5 191 aa13.83□□□□□ -0.2
SMAD4-201ENST00000342988 ZNF706Q9Y5V0 76 aaPredicted RBP13.83□□□□□ -0.2
SMAD4-201ENST00000342988 UBE2D1P51668 147 aa13.83□□□□□ -0.2
SMAD4-201ENST00000342988 C7orf33Q8WU49 177 aa13.83□□□□□ -0.2
SMAD4-201ENST00000342988 C11orf86A6NJI1 115 aa13.83□□□□□ -0.2
SMAD4-201ENST00000342988 G3V318 75 aa13.83□□□□□ -0.2
SMAD4-201ENST00000342988 LRRK2Q5S007 2527 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 IGLV2-23P01705 113 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 FAM19A3Q7Z5A8 133 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 GTSF1Q8WW33 167 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 GNRH2O43555 120 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 GP9P14770 177 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 CLEC2BQ92478 149 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 LYPD6Q86Y78 171 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 LINC00311Q8N616 119 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 TOMM6Q96B49 74 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 BLCAPP62952 87 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 Q8TCH9 128 aa13.82□□□□□ -0.2
SMAD4-201ENST00000342988 TRAV26-1A0A087WT03 109 aa13.81□□□□□ -0.2
SMAD4-201ENST00000342988 PMAIP1Q13794 54 aa13.81□□□□□ -0.2
SMAD4-201ENST00000342988 HIVEP3Q5T1R4 2406 aa13.81□□□□□ -0.2
SMAD4-201ENST00000342988 E7EQL1 145 aa13.8□□□□□ -0.2
SMAD4-201ENST00000342988 MYO9AB2RTY4 2548 aa13.8□□□□□ -0.2
SMAD4-201ENST00000342988 IGLV3-9A0A075B6K5 115 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 414.4 ms