RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TDRG1Q3Y452 100 aa10.27□□□□□ -0.77
LDLR-201ENST00000252444 ZNF747Q9BV97 191 aa10.27□□□□□ -0.77
LDLR-201ENST00000252444 A0A1B0GXF2 115 aa10.27□□□□□ -0.77
LDLR-201ENST00000252444 IFITM1P13164 125 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 GAGE6Q13070 117 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 TOMM6Q96B49 74 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 ABCA4P78363 2273 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 ATXN8Q156A1 80 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 C1orf43Q9BWL3 253 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 RS1O15537 224 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 KRTAP10-9P60411 292 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 SLC25A29Q8N8R3 303 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 TRBV6-4A0A1B0GX49 114 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 COX8CQ7Z4L0 72 aa10.26□□□□□ -0.77
LDLR-201ENST00000252444 KLLNB2CW77 178 aa10.25□□□□□ -0.77
LDLR-201ENST00000252444 IGHV4-4A0A075B6R2 117 aa10.25□□□□□ -0.77
LDLR-201ENST00000252444 H7C2G1 150 aa10.25□□□□□ -0.77
LDLR-201ENST00000252444 JPT2Q9H910 190 aa10.25□□□□□ -0.77
LDLR-201ENST00000252444 TRAV8-2A0A0B4J237 113 aa10.25□□□□□ -0.77
LDLR-201ENST00000252444 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.25□□□□□ -0.77
LDLR-201ENST00000252444 AVPP01185 164 aa10.24□□□□□ -0.77
LDLR-201ENST00000252444 ANGP03950 147 aaKnown RBP10.24□□□□□ -0.77
LDLR-201ENST00000252444 TRAV13-2A0A0B4J235 113 aa10.24□□□□□ -0.77
LDLR-201ENST00000252444 IGLV2-8P01709 118 aa10.24□□□□□ -0.77
LDLR-201ENST00000252444 GTSF1Q8WW33 167 aa10.24□□□□□ -0.77
LDLR-201ENST00000252444 C11orf45Q8TAV5 145 aa10.23□□□□□ -0.77
LDLR-201ENST00000252444 SHANK1Q9Y566 2161 aa10.23□□□□□ -0.77
LDLR-201ENST00000252444 COX8AP10176 69 aa10.23□□□□□ -0.77
LDLR-201ENST00000252444 TTC32Q5I0X7 151 aa10.23□□□□□ -0.77
LDLR-201ENST00000252444 TRBV6-5A0A0K0K1A5 114 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 GATD1Q8NB37 220 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 TRAV26-2A0A0B4J265 109 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 IGLV1-51P01701 117 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 ZFAND2AQ8N6M9 145 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 FSHBP01225 129 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 DEFB125Q8N687 156 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 TRAV10A0A0B4J240 114 aa10.22□□□□□ -0.77
LDLR-201ENST00000252444 RAI1Q7Z5J4 1906 aaPredicted RBP10.22□□□□□ -0.77
LDLR-201ENST00000252444 MRAPQ8TCY5 172 aa10.21□□□□□ -0.77
LDLR-201ENST00000252444 DCANP1Q8TF63 244 aa10.21□□□□□ -0.77
LDLR-201ENST00000252444 DEFB135Q30KP9 77 aa10.21□□□□□ -0.77
LDLR-201ENST00000252444 SPCS1Q9Y6A9 102 aa10.21□□□□□ -0.77
LDLR-201ENST00000252444 PIEZO1Q92508 2521 aa10.21□□□□□ -0.77
LDLR-201ENST00000252444 MDFICQ9P1T7 246 aa10.21□□□□□ -0.78
LDLR-201ENST00000252444 NDUFA12Q9UI09 145 aa10.21□□□□□ -0.78
LDLR-201ENST00000252444 RIPPLY3P57055 190 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 NKAPP1Q8N9T2 125 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 ZNF479Q96JC4 524 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 C20orf173Q96LM9 149 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 IGKV3D-20A0A0C4DH25 116 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 U3KQK5 164 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 TRBV20-1A0A075B6N2 111 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 COX7A2LO14548 114 aa10.2□□□□□ -0.78
LDLR-201ENST00000252444 J3QQQ9 107 aa10.19□□□□□ -0.78
LDLR-201ENST00000252444 MRPS12O15235 138 aaKnown RBP10.19□□□□□ -0.78
LDLR-201ENST00000252444 CST9LQ9H4G1 147 aa10.19□□□□□ -0.78
LDLR-201ENST00000252444 C11orf86A6NJI1 115 aa10.19□□□□□ -0.78
LDLR-201ENST00000252444 F8WEM9 126 aa10.19□□□□□ -0.78
LDLR-201ENST00000252444 F8W735 103 aaPredicted RBP10.19□□□□□ -0.78
LDLR-201ENST00000252444 PCNX1Q96RV3 2341 aa10.19□□□□□ -0.78
LDLR-201ENST00000252444 PRSS29PA6NIE9 313 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 SPATA12Q7Z6I5 190 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 RNF151Q2KHN1 245 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 C20orf203Q8NBC4 194 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 C9orf85Q96MD7 179 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 CNFNQ9BYD5 112 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 STPG4Q8N801 248 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 ZNF664Q8N3J9 261 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 MUC7Q8TAX7 377 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 SPANXDQ9BXN6 97 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 GTSF1LQ9H1H1 148 aa10.18□□□□□ -0.78
LDLR-201ENST00000252444 MRPL35Q9NZE8 188 aaKnown RBP10.18□□□□□ -0.78
LDLR-201ENST00000252444 IGLL1P15814 213 aa10.17□□□□□ -0.78
LDLR-201ENST00000252444 ROS1P08922 2347 aa10.17□□□□□ -0.78
LDLR-201ENST00000252444 CHCHD7Q9BUK0 85 aa10.17□□□□□ -0.78
LDLR-201ENST00000252444 NFE4Q86UQ8 179 aa10.17□□□□□ -0.78
LDLR-201ENST00000252444 LINC00482Q8N8I6 264 aa10.17□□□□□ -0.78
LDLR-201ENST00000252444 DLEU1O43261 78 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 MTURNQ8N3F0 131 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 IGHV3-38A0A0C4DH36 116 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 IGLV2-11P01706 119 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 HIST2H2BCQ6DN03 193 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 FGF6P10767 208 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 SAMD5Q5TGI4 173 aa10.16□□□□□ -0.78
LDLR-201ENST00000252444 PYY3Q5JQD4 70 aa10.15□□□□□ -0.78
LDLR-201ENST00000252444 hDV102S1A0JD36 115 aa10.15□□□□□ -0.78
LDLR-201ENST00000252444 PYGO1Q9Y3Y4 419 aa10.15□□□□□ -0.78
LDLR-201ENST00000252444 HIGD1BQ9P298 99 aa10.15□□□□□ -0.78
LDLR-201ENST00000252444 PROK1P58294 105 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 TRAV8-3A0A0A6YYJ7 113 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 A0A0J9YY99 117 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 NDUFA1O15239 70 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 PLCE1Q9P212 2302 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 IGKV2D-24A0A075B6R9 120 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 TINCRA0A1B0GVN0 87 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 RPL39LQ96EH5 51 aaKnown RBP10.14□□□□□ -0.79
LDLR-201ENST00000252444 TANC2Q9HCD6 1990 aa10.14□□□□□ -0.79
LDLR-201ENST00000252444 ZNF80P51504 273 aaPredicted RBP10.14□□□□□ -0.79
LDLR-201ENST00000252444 NHLRC4P0CG21 123 aaPredicted RBP10.13□□□□□ -0.79
LDLR-201ENST00000252444 COL27A1Q8IZC6 1860 aaPredicted RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms