RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IGLV4-69A0A075B6H9 119 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 E9PLD3 99 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 F8VRH5 84 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 IGHV4-4A0A075B6R2 117 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 OOSP1A8MZH6 123 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 COTL1Q14019 142 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 GTF2H5Q6ZYL4 71 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 IGHV3-73A0A0B4J1V6 119 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 IGHV1-69DA0A0B4J2H0 117 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 IGHV1-69P01742 117 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 SRSF1Q07955 248 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP28-201ENST00000003302 RNASE13Q5GAN3 156 aaKnown RBP7.97□□□□□ -1.13
USP28-201ENST00000003302 CHTOPQ9Y3Y2 248 aaKnown RBP7.97□□□□□ -1.13
USP28-201ENST00000003302 HTN1P15515 57 aa7.96□□□□□ -1.13
USP28-201ENST00000003302 CEMP1Q6PRD7 247 aaPredicted RBP7.96□□□□□ -1.13
USP28-201ENST00000003302 ZNF479Q96JC4 524 aa7.96□□□□□ -1.13
USP28-201ENST00000003302 FAM19A4Q96LR4 140 aa7.96□□□□□ -1.13
USP28-201ENST00000003302 MOB4Q9Y3A3 225 aa7.96□□□□□ -1.13
USP28-201ENST00000003302 PRO0461Q9UI25 63 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 TMEM238C9JI98 176 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 CLEC2AQ6UVW9 174 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 TOMM6Q96B49 74 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 DUX3Q96PT4 197 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 TP53TG1Q9Y2A0 90 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 ZNF256Q9Y2P7 627 aaPredicted RBP7.96□□□□□ -1.14
USP28-201ENST00000003302 COX6B1P14854 86 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 SMAGPQ0VAQ4 97 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 KLK9Q2XQG4 91 aa7.96□□□□□ -1.14
USP28-201ENST00000003302 SPAG8Q99932 426 aaPredicted RBP7.96□□□□□ -1.14
USP28-201ENST00000003302 TSSC4Q9Y5U2 329 aaPredicted RBP7.96□□□□□ -1.14
USP28-201ENST00000003302 RBMY1A1P0DJD3 496 aaKnown RBP7.95□□□□□ -1.14
USP28-201ENST00000003302 RBMY1CP0DJD4 496 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 RBMY1FQ15415 496 aaKnown RBP7.95□□□□□ -1.14
USP28-201ENST00000003302 SUMO4Q6EEV6 95 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 SPANXB1Q9NS25 103 aaPredicted RBP7.95□□□□□ -1.14
USP28-201ENST00000003302 HIGD1BQ9P298 99 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 TENM1Q9UKZ4 2725 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 OTOGQ6ZRI0 2925 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 ADARB2-AS1A8MUL3 147 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 IGHV4-59P01825 116 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 NFE4Q86UQ8 179 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 DCANP1Q8TF63 244 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 C20orf78Q9BR46 151 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 DEFB136Q30KP8 78 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 HIVEP2P31629 2446 aa7.95□□□□□ -1.14
USP28-201ENST00000003302 A8MZ25 164 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 APOMO95445 188 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 SPINK13Q1W4C9 94 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 FOXI2Q6ZQN5 318 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 LINC01549A6NIU2 74 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 ATP5LO75964 103 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 S100A7AQ86SG5 101 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 ARL6IP6Q8N6S5 226 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 MYMXA0A1B0GTQ4 84 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 PRSS47A8MTI9 375 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 CD7P09564 240 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 NOTCH2Q04721 2471 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 ZNF815PA8K554 130 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 ELANEP08246 267 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 PGPEP1Q9NXJ5 209 aa7.94□□□□□ -1.14
USP28-201ENST00000003302 H7C1H1 209 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 ASIPP42127 132 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 RAB9AP51151 201 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 C9orf139Q6ZV77 190 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 OR10J6PQ8NGY7 276 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 DPH3P1Q9H4G8 78 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 PDZD2O15018 2839 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 Q6ZSV7 163 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 IGIPA6NJ69 53 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 F5H697 171 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 TRAV21A0A0B4J279 112 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 PSMG4Q5JS54 123 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 Q8N1Y9 231 aa7.93□□□□□ -1.14
USP28-201ENST00000003302 OR11H12B2RN74 326 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 IGHG2P01859 326 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 AZU1P20160 251 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 OR11H1Q8NG94 326 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 OR11H2Q8NH07 326 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 KNCNA6PVL3 124 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 CRIP2P52943 208 aaPredicted RBP7.92□□□□□ -1.14
USP28-201ENST00000003302 SMIM15Q7Z3B0 74 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 FAM104AQ969W3 186 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 AMELXQ99217 191 aa7.92□□□□□ -1.14
USP28-201ENST00000003302 NDUFA4O00483 81 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 RRN3P1Q2M238 152 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 SDHAF1A6NFY7 115 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 KLLNB2CW77 178 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 HELZ2Q9BYK8 2649 aaKnown RBP7.91□□□□□ -1.14
USP28-201ENST00000003302 A6NDX4 124 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 POLR2KP53803 58 aaKnown RBP7.91□□□□□ -1.14
USP28-201ENST00000003302 MRAP2Q96G30 205 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 PKD1L1Q8TDX9 2849 aa7.91□□□□□ -1.14
USP28-201ENST00000003302 TSPAN13O95857 204 aa7.9□□□□□ -1.14
USP28-201ENST00000003302 PLNP26678 52 aa7.9□□□□□ -1.14
USP28-201ENST00000003302 SYNJ2BPP57105 145 aa7.9□□□□□ -1.14
USP28-201ENST00000003302 SCGB1D4Q6XE38 83 aa7.9□□□□□ -1.14
USP28-201ENST00000003302 ZNF418Q8TF45 676 aaPredicted RBP7.9□□□□□ -1.14
USP28-201ENST00000003302 CR1P17927 2039 aa7.9□□□□□ -1.14
USP28-201ENST00000003302 IGLV1-40P01703 118 aa7.9□□□□□ -1.15
USP28-201ENST00000003302 PRB1P04280 392 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms