RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 HLA-DRB4P13762 266 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 FAM104BQ5XKR9 115 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 MIR17HGQ75NE6 70 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 MPLKIPQ8TAP9 179 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 CAMK2N2Q96S95 79 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 HLA-DRB4X5D2U9 266 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 TINCRA0A1B0GVN0 87 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 NCR3O14931 201 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 RNASE2P10153 161 aaKnown RBP2.25□□□□□ -2.05
SCN1A-219ENST00000641575 C14orf132Q9NPU4 83 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 LINC00527Q9UJ94 153 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 C3orf79P0CE67 100 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 GFRA4Q9GZZ7 299 aa2.25□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-49A0A0A0MS15 119 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 COX8AP10176 69 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 FOXE3Q13461 319 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF329Q86UD4 541 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 NRXN2Q9P2S2 1712 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGKV3D-7A0A0C4DH55 119 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 PRSS29PA6NIE9 313 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 FGF6P10767 208 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 TMEM141Q96I45 108 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 TNFRSF12AQ9NP84 129 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 CHD7Q9P2D1 2997 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 NIPBLQ6KC79 2804 aaeCLIP2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-66A0A0C4DH42 116 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 A6NED7 52 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 I3L3M4 83 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-48P01763 117 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 PLA2G1BP04054 148 aaKnown RBP2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IMMP1LQ96LU5 166 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 EPOPA6NHQ4 379 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 NPIPB5A8MRT5 1133 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 GYPEP15421 78 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 SPINK2P20155 84 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 SERTAD4-AS1Q5TG53 156 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 SLC25A45Q8N413 288 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 NUP35Q8NFH5 326 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 SIGLEC9Q9Y336 463 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 H0Y9J4 135 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 NDUFA1O15239 70 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 KALRNO60229 2985 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGKV4-1P06312 121 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGFL3Q6UXB1 125 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 NRTNQ99748 197 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 DKK2Q9UBU2 259 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV2-70P01814 119 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 BAALC-AS2P0C853 105 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 WIPF2Q8TF74 440 aaPredicted RBP2.24□□□□□ -2.05
SCN1A-219ENST00000641575 Q96M66 194 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGKV1OR2-108A0A075B7D4 117 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 DEFB125Q8N687 156 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 MUC7Q8TAX7 377 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 CENPVL3A0A0U1RRI6 287 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 SAA4P35542 130 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV2-70DA0A0C4DH43 119 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 TMEM89A2RUT3 159 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 CRYGBP07316 175 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 FXYD7P58549 80 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 Q8N976 141 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 Q8N9W7 124 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 VSIG2Q96IQ7 327 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 WDR90Q96KV7 1748 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-72A0A0B4J1Y9 119 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV1-69DA0A0B4J2H0 117 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 DNAJC9-AS1A6NH13 148 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV1-69P01742 117 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 CELA2BP08218 269 aaPredicted RBP2.24□□□□□ -2.05
SCN1A-219ENST00000641575 OCC1Q8TAD7 63 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 C10orf105Q8TEF2 133 aa2.24□□□□□ -2.05
SCN1A-219ENST00000641575 SMIM27A0A1W2PRY6 76 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 NDUFA7O95182 113 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGLC2P0DOY2 106 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGLC3P0DOY3 106 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 HMGA1P17096 107 aaKnown RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 PSG4Q00888 419 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 FOXI2Q6ZQN5 318 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 EFNB3Q15768 340 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 PEAR1Q5VY43 1037 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 TRAV23DV6A0A075B6W5 121 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 SRRM4A7MD48 611 aaKnown RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 C1orf159Q96HA4 380 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 WFDC1Q9HC57 220 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF492Q9P255 531 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 PDZD2O15018 2839 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV2-26A0A0B4J1V2 119 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 TRAV10A0A0B4J240 114 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 PRR30Q53SZ7 412 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 ZNF474Q6S9Z5 364 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-219ENST00000641575 HHLA3Q9XRX5 114 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3OR16-13A0A075B7E8 117 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-74A0A0B4J1X5 117 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 TMEM256-PLSCR3K7ERE1 68 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 NXPH4O95158 308 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGLV3-27P01718 113 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 Q9HAA7 133 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 H0YGX0 51 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 SPRY2O43597 315 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 IGHV3-11P01762 117 aa2.23□□□□□ -2.05
SCN1A-219ENST00000641575 FRMD6-AS1P0C7T7 363 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms