RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 LINC00467Q9BRT7 94 aa13.46□□□□□ -0.26
CLN3-254ENST00000637050 C2orf88Q9BSF0 95 aa13.46□□□□□ -0.26
CLN3-254ENST00000637050 TP53TG3Q9ULZ0 132 aa13.46□□□□□ -0.26
CLN3-254ENST00000637050 IGHV4-4A0A075B6R2 117 aa13.45□□□□□ -0.26
CLN3-254ENST00000637050 OR10AG1Q8NH19 301 aa13.45□□□□□ -0.26
CLN3-254ENST00000637050 COL6A5A8TX70 2615 aa13.45□□□□□ -0.26
CLN3-254ENST00000637050 IGHV3-16A0A0C4DH30 117 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 ZNF493Q6ZR52 646 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 TRGC1P0CF51 173 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 S100A2P29034 98 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 CACNG7P62955 275 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 EGFEM1PQ0D2K5 195 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 TWIST1Q15672 202 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 C1orf158Q8N1D5 194 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 TMEM256Q8N2U0 113 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 C1QTNF4Q9BXJ3 329 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 MSRB1Q9NZV6 116 aa13.44□□□□□ -0.26
CLN3-254ENST00000637050 NOTCH3Q9UM47 2321 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 TRGV11A0A075B6L2 103 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 TSTD3H0UI37 97 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BKO60814 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 APCSP02743 223 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BJP06899 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BOP23527 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BBP33778 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BDP58876 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BCP62807 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 SLAQ13239 276 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST2H2BEQ16778 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BHQ93079 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 C9orf85Q96MD7 179 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 LINC01587Q99440 93 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BNQ99877 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 HIST1H2BMQ99879 126 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 TIMM8BQ9Y5J9 83 aaPredicted RBP13.43□□□□□ -0.26
CLN3-254ENST00000637050 TRRAPQ9Y4A5 3859 aa13.43□□□□□ -0.26
CLN3-254ENST00000637050 CBY3A6NI87 242 aa13.42□□□□□ -0.26
CLN3-254ENST00000637050 MDFICQ9P1T7 246 aa13.42□□□□□ -0.26
CLN3-254ENST00000637050 A0A1B0GV90 55 aa13.41□□□□□ -0.26
CLN3-254ENST00000637050 PKIAP61925 76 aa13.41□□□□□ -0.26
CLN3-254ENST00000637050 SPANXN1Q5VSR9 72 aa13.41□□□□□ -0.26
CLN3-254ENST00000637050 PHLDA3Q9Y5J5 127 aa13.41□□□□□ -0.26
CLN3-254ENST00000637050 NXPH4O95158 308 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 KRTAP10-11P60412 298 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 CSNK1G2-AS1Q8NCQ2 148 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 C14orf144Q96I85 54 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 CSTL1Q9H114 145 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 SPRY2O43597 315 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 TMEM191AQ9H0A3 160 aa13.4□□□□□ -0.26
CLN3-254ENST00000637050 TCAPO15273 167 aa13.39□□□□□ -0.27
CLN3-254ENST00000637050 HTN1P15515 57 aa13.39□□□□□ -0.27
CLN3-254ENST00000637050 KIAA1644Q3SXP7 199 aa13.39□□□□□ -0.27
CLN3-254ENST00000637050 TMEM208Q9BTX3 173 aa13.39□□□□□ -0.27
CLN3-254ENST00000637050 M0R381 172 aa13.38□□□□□ -0.27
CLN3-254ENST00000637050 PRM2P04554 102 aa13.38□□□□□ -0.27
CLN3-254ENST00000637050 DMRTA1Q5VZB9 504 aa13.38□□□□□ -0.27
CLN3-254ENST00000637050 GOLT1BQ9Y3E0 138 aa13.38□□□□□ -0.27
CLN3-254ENST00000637050 LOC102724200A0A096LPH7 203 aaPredicted RBP13.37□□□□□ -0.27
CLN3-254ENST00000637050 FAM104BQ5XKR9 115 aa13.37□□□□□ -0.27
CLN3-254ENST00000637050 IGHV3OR16-12A0A075B7B8 117 aa13.37□□□□□ -0.27
CLN3-254ENST00000637050 SAMD5Q5TGI4 173 aa13.37□□□□□ -0.27
CLN3-254ENST00000637050 C11orf72Q8NBR9 251 aa13.37□□□□□ -0.27
CLN3-254ENST00000637050 KIR2DL5BA0A0G2JN68 375 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 KIR2DL5BA0A0G2JPC4 375 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 G3V4G9 280 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 DDTP30046 118 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 ZNF415Q09FC8 603 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 ZNF705AQ6ZN79 300 aaPredicted RBP13.36□□□□□ -0.27
CLN3-254ENST00000637050 AMN1Q8IY45 258 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 KIR2DL5AQ8N109 375 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 KIR2DL5BQ8NHK3 375 aa13.36□□□□□ -0.27
CLN3-254ENST00000637050 EVI2AP22794 236 aa13.35□□□□□ -0.27
CLN3-254ENST00000637050 MUC4Q99102 2169 aa13.35□□□□□ -0.27
CLN3-254ENST00000637050 IGHV4-30-4P0DP06 118 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 AZU1P20160 251 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 HOXA5P20719 270 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 SRIP30626 198 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 SMIM15Q7Z3B0 74 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 ALKBH7Q9BT30 221 aaPredicted RBP13.34□□□□□ -0.27
CLN3-254ENST00000637050 APOC4P55056 127 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 NDUFA6P56556 154 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 RNASE8Q8TDE3 154 aaKnown RBP13.34□□□□□ -0.27
CLN3-254ENST00000637050 RNF185Q96GF1 192 aa13.34□□□□□ -0.27
CLN3-254ENST00000637050 MRPL51Q4U2R6 128 aaKnown RBP13.33□□□□□ -0.28
CLN3-254ENST00000637050 SYT8Q8NBV8 401 aa13.33□□□□□ -0.28
CLN3-254ENST00000637050 AP1S3Q96PC3 154 aa13.33□□□□□ -0.28
CLN3-254ENST00000637050 SPXQ9BT56 116 aa13.33□□□□□ -0.28
CLN3-254ENST00000637050 PCP4P48539 62 aa13.32□□□□□ -0.28
CLN3-254ENST00000637050 TMEM263Q8WUH6 116 aaKnown RBP13.32□□□□□ -0.28
CLN3-254ENST00000637050 PTH2Q96A98 100 aa13.32□□□□□ -0.28
CLN3-254ENST00000637050 RCHY1Q96PM5 261 aa13.32□□□□□ -0.28
CLN3-254ENST00000637050 A8MZ25 164 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 Q0VG73 95 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 COA6Q5JTJ3 125 aaKnown RBP13.31□□□□□ -0.28
CLN3-254ENST00000637050 IL17DQ8TAD2 202 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 U3KQK5 164 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 M0R2P5 195 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 RIPPLY3P57055 190 aa13.31□□□□□ -0.28
CLN3-254ENST00000637050 COTL1Q14019 142 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms