RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PRADC1Q9BSG0 188 aa9.3□□□□□ -0.92
CLN3-249ENST00000636685 PRELID1Q9Y255 219 aa9.3□□□□□ -0.92
CLN3-249ENST00000636685 TRGV11A0A075B6L2 103 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 FBLL1A6NHQ2 334 aaKnown RBP9.29□□□□□ -0.92
CLN3-249ENST00000636685 M0R2P5 195 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 HIST1H1EP10412 219 aaKnown RBP9.29□□□□□ -0.92
CLN3-249ENST00000636685 RAB5CP51148 216 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 RHOHQ15669 191 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 FFAR4Q5NUL3 377 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 HSD17B11Q8NBQ5 300 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 SMIM8Q96KF7 97 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 MGST2Q99735 147 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 C11orf1Q9H5F2 150 aa9.29□□□□□ -0.92
CLN3-249ENST00000636685 FNDC10F2Z333 226 aa9.28□□□□□ -0.92
CLN3-249ENST00000636685 BAXQ07812 192 aa9.28□□□□□ -0.92
CLN3-249ENST00000636685 TIMM9Q9Y5J7 89 aa9.28□□□□□ -0.92
CLN3-249ENST00000636685 IGHV3-73A0A0B4J1V6 119 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 SSSCA1O60232 199 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 ZNF138P52744 262 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 ZNF266Q14584 549 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 FAM159AQ6UWV7 190 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 TMEM14EPQ6UXP3 125 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 SUN5Q8TC36 379 aa9.27□□□□□ -0.93
CLN3-249ENST00000636685 LYRM2Q9NU23 88 aaPredicted RBP9.27□□□□□ -0.93
CLN3-249ENST00000636685 TRBV6-4A0A1B0GX49 114 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 FAM24AA6NFZ4 105 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 GNRH2O43555 120 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 OR10J4P0C629 311 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 TAS2R30P59541 319 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 NHLH2Q02577 135 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 ARL16Q0P5N6 197 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 C14orf177Q52M58 125 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 TMEM252Q8N6L7 170 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 UBE2WQ96B02 151 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 SMIM3Q9BZL3 60 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 NAGKQ9UJ70 344 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 KLK12Q9UKR0 248 aa9.26□□□□□ -0.93
CLN3-249ENST00000636685 TMEM218A2RU14 115 aa9.25□□□□□ -0.93
CLN3-249ENST00000636685 PYYP10082 97 aa9.25□□□□□ -0.93
CLN3-249ENST00000636685 KRTAP10-8P60410 259 aa9.25□□□□□ -0.93
CLN3-249ENST00000636685 MIC13Q5XKP0 118 aa9.25□□□□□ -0.93
CLN3-249ENST00000636685 WFDC1Q9HC57 220 aa9.25□□□□□ -0.93
CLN3-249ENST00000636685 A0A0J9YXV3 536 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 UMAD1C9J7I0 102 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 CAV2P51636 162 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 PDE6HQ13956 83 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 CFAP126Q5VTH2 177 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 Q6AWC8 147 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 Q6ZRG5 221 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 LYPD6BQ8NI32 183 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 AAMDCQ9H7C9 122 aa9.24□□□□□ -0.93
CLN3-249ENST00000636685 TRBV7-9A0A0J9YWB2 115 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 IGSF23A1L1A6 192 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 APOC3P02656 99 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 CAMLGP49069 296 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 RAB31Q13636 194 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 DPPA3Q6W0C5 159 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 STX12Q86Y82 276 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 C9orf163Q8N9P6 203 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 OR1L4Q8NGR5 311 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 OR51M1Q9H341 326 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 TREM1Q9NP99 234 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 TMEM14CQ9P0S9 112 aa9.23□□□□□ -0.93
CLN3-249ENST00000636685 GAGE12JA6NER3 117 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 SULT1A1P50225 295 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 GAGE1Q13065 139 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 GAGE4Q13068 117 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 GAGE5Q13069 117 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 PEA15Q15121 130 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 GAGE13Q4V321 117 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 C10orf91Q5T1B1 145 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 SDIM1Q6ZPB5 146 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 NIT1Q86X76 327 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 ZC2HC1AQ96GY0 325 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 URGCP-MRPS24S4R325 110 aa9.22□□□□□ -0.93
CLN3-249ENST00000636685 USP17L23D6RBM5 183 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 TYMSP04818 313 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 PRSS1P07477 247 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 ATP6V1FQ16864 119 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 ATRAIDQ6UW56 229 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 SVBPQ8N300 66 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 OR2G3Q8NGZ4 309 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 SCGB1C1Q8TD33 95 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 PFDN5Q99471 154 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 ATP5SQ99766 215 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 SEC11CQ9BY50 192 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 SH3BGRL3Q9H299 93 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 SMDT1Q9H4I9 107 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 UQCC1Q9NVA1 299 aa9.21□□□□□ -0.94
CLN3-249ENST00000636685 CARHSP1Q9Y2V2 147 aaKnown RBP9.21□□□□□ -0.94
CLN3-249ENST00000636685 F8W036 122 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 PHOX2AO14813 284 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 SCO1O75880 301 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 LINC00694P0DN24 101 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 RAB2AP61019 212 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 HBG1P69891 147 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 HBG2P69892 147 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 ZNF876PQ49A33 203 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 OR5C1Q8NGR4 320 aa9.2□□□□□ -0.94
CLN3-249ENST00000636685 GGACTQ9BVM4 153 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms