RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 DGCR14Q96DF8 476 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 BORCS8Q96FH0 119 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 PARVGQ9HBI0 331 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 COA4Q9NYJ1 87 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 IL20Q9NYY1 176 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 LOC400499M0QZD8 3231 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 VPS13BQ7Z7G8 4022 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 USP54Q70EL1 1684 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 RREB1Q92766 1687 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.66□□□□□ -2.51
SCN1A-208ENST00000625916 CPDO75976 1380 aa-0.66□□□□□ -2.51
SCN1A-208ENST00000625916 TANC2Q9HCD6 1990 aa-0.66□□□□□ -2.51
SCN1A-208ENST00000625916 LOC107986453A0A1B0GWG9 222 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 H7BYZ3 331 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 CDC42EP2O14613 210 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 CCKP06307 115 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 CTXN2P0C2S0 81 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 SDC4P31431 198 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 GTF2A1P52655 376 aaPredicted RBP-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 ARF6P62330 175 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 REEP5Q00765 189 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 RHOHQ15669 191 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 PPP1R1CQ8WVI7 109 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 PRELID3AQ96N28 172 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 SMIM7Q9BQ49 75 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 OTORQ9NRC9 128 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 FKBP11Q9NYL4 201 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 SS18L2Q9UHA2 77 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 CDK13Q14004 1512 aaKnown RBP-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 TRAPPC8Q9Y2L5 1435 aa-0.66□□□□□ -2.52
SCN1A-208ENST00000625916 PKD1P98161 4303 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 PKHD1P08F94 4074 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 COL14A1Q05707 1796 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 DLC1Q96QB1 1528 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 MUC17Q685J3 4493 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 IFITM5A6NNB3 132 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 CSN2P05814 226 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 MT1BP07438 61 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 OR13C6PQ8NH95 151 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 CEP19Q96LK0 163 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 LAMTOR3Q9UHA4 124 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 CSMD1Q96PZ7 3565 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 EP400Q96L91 3159 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 MAP2P11137 1827 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 PKDREJQ9NTG1 2253 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 TNS1Q9HBL0 1735 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 CENPEQ02224 2701 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 CAMSAP1Q5T5Y3 1602 aa-0.67□□□□□ -2.52
SCN1A-208ENST00000625916 PRM1P04553 51 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 IFNA6P05013 189 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 MT1HL1P0DM35 61 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 TMED2Q15363 201 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 LTC4SQ16873 150 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 UNQ5815/PRO19632Q6UWF5 114 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 AP3S1Q92572 193 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 TMEM141Q96I45 108 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 GINS3Q9BRX5 216 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 LRTM1Q9HBL6 345 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 BET1LQ9NYM9 111 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 ALMS1Q8TCU4 4167 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 WNK1Q9H4A3 2382 aa-0.68□□□□□ -2.52
SCN1A-208ENST00000625916 SPEGQ15772 3267 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 DLEC1Q9Y238 1755 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 TRAV12-2A0A075B6T6 113 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 IFNA1P01562 189 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 APOC1P02654 83 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 PYYP10082 97 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 SDC2P34741 201 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 DHRS4L2Q6PKH6 230 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 OR5A2Q8NGI9 324 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 CARD19Q96LW7 228 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 MED11Q9P086 117 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 TCOF1Q13428 1488 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 ZFHX4Q86UP3 3567 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 CNOT1A5YKK6 2376 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 ADGBQ8N7X0 1667 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 ZZEF1O43149 2961 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 DOCK11Q5JSL3 2073 aa-0.69□□□□□ -2.52
SCN1A-208ENST00000625916 DMXL1Q9Y485 3027 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 GVQW2A0A096LPI5 108 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 TRBV10-1A0A0K0K1A3 114 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 TEX49A0A1B0GTD5 131 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 TRDV1A0A1B0GX56 115 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 GABARAPH6UMI1 98 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 MFSD11O43934 449 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 APODP05090 189 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 S100A6P06703 90 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 EMX2Q04743 252 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 SMIM11BQ8TCY0 68 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 NUBP2Q9Y5Y2 271 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 DNAH5Q8TE73 4624 aa-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 HELZP42694 1942 aaKnown RBP-0.7□□□□□ -2.52
SCN1A-208ENST00000625916 TECPR2O15040 1411 aa-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 ZNF670-ZNF695F2Z2N8 137 aa-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 POLR2JP52435 117 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 LSM3P62310 102 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 MRPS25P82663 173 aaKnown RBP-0.71□□□□□ -2.52
SCN1A-208ENST00000625916 RPL19P84098 196 aaKnown RBP-0.71□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms