RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 DUX3Q96PT4 197 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 ZNF747Q9BV97 191 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 FASNP49327 2511 aaKnown RBP8.01□□□□□ -1.13
CUX1-221ENST00000622516 ZNF688P0C7X2 276 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 HERV-K104P63124 156 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 CRXO43186 299 aaPredicted RBP8.01□□□□□ -1.13
CUX1-221ENST00000622516 Q6YL49 198 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 WFDC11Q8NEX6 87 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 CNFNQ9BYD5 112 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 HSPB8Q9UJY1 196 aa8.01□□□□□ -1.13
CUX1-221ENST00000622516 PDZD2O15018 2839 aa8□□□□□ -1.13
CUX1-221ENST00000622516 J3QLI3 93 aa8□□□□□ -1.13
CUX1-221ENST00000622516 IGHV4OR15-8A0A075B7B6 117 aa8□□□□□ -1.13
CUX1-221ENST00000622516 A0A087WW49 117 aa8□□□□□ -1.13
CUX1-221ENST00000622516 SNAI2O43623 268 aa8□□□□□ -1.13
CUX1-221ENST00000622516 TNFRSF6BO95407 300 aa8□□□□□ -1.13
CUX1-221ENST00000622516 S100A4P26447 101 aaKnown RBP8□□□□□ -1.13
CUX1-221ENST00000622516 ANXA2RQ3ZCQ2 193 aa8□□□□□ -1.13
CUX1-221ENST00000622516 DEFB104AQ8WTQ1 72 aa8□□□□□ -1.13
CUX1-221ENST00000622516 LINC00477Q96M19 166 aa8□□□□□ -1.13
CUX1-221ENST00000622516 ZNF702PQ9H963 129 aa8□□□□□ -1.13
CUX1-221ENST00000622516 MUC4Q99102 2169 aa8□□□□□ -1.13
CUX1-221ENST00000622516 JMJD1CQ15652 2540 aa8□□□□□ -1.13
CUX1-221ENST00000622516 UNC79Q9P2D8 2635 aa8□□□□□ -1.13
CUX1-221ENST00000622516 OVOL1O14753 267 aa7.99□□□□□ -1.13
CUX1-221ENST00000622516 SRSF2Q01130 221 aaKnown RBP7.99□□□□□ -1.13
CUX1-221ENST00000622516 PSMG4Q5JS54 123 aa7.99□□□□□ -1.13
CUX1-221ENST00000622516 KLHDC1Q8N7A1 406 aa7.99□□□□□ -1.13
CUX1-221ENST00000622516 GCN1Q92616 2671 aaKnown RBP7.99□□□□□ -1.13
CUX1-221ENST00000622516 TRAV12-2A0A075B6T6 113 aa7.99□□□□□ -1.13
CUX1-221ENST00000622516 DCANP1Q8TF63 244 aa7.99□□□□□ -1.13
CUX1-221ENST00000622516 MS4A6AQ9H2W1 248 aa7.99□□□□□ -1.13
CUX1-221ENST00000622516 TSPOP30536 169 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 KHDC1LQ5JSQ8 128 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 KRTAP1-3Q8IUG1 177 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 C14orf178Q8N769 122 aaPredicted RBP7.98□□□□□ -1.13
CUX1-221ENST00000622516 FAM110AQ9BQ89 295 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 TNFRSF18Q9Y5U5 241 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 FSHBP01225 129 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 HOXD3P31249 432 aaPredicted RBP7.98□□□□□ -1.13
CUX1-221ENST00000622516 CACNG7P62955 275 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 C11orf44Q8N8P7 122 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 MAP1LC3AQ9H492 121 aa7.98□□□□□ -1.13
CUX1-221ENST00000622516 TRAV12-3A0A0B4J271 114 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 TRAV21A0A0B4J279 112 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 LEPP41159 167 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 SLURP1P55000 103 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 PET117Q6UWS5 81 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 HBDP02042 147 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 LINC01545Q5VT33 79 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 PHLDA3Q9Y5J5 127 aa7.97□□□□□ -1.13
CUX1-221ENST00000622516 MRPS16Q9Y3D3 137 aaKnown RBP7.96□□□□□ -1.13
CUX1-221ENST00000622516 K7EMT4 169 aa7.96□□□□□ -1.14
CUX1-221ENST00000622516 ERASQ7Z444 233 aa7.96□□□□□ -1.14
CUX1-221ENST00000622516 OR2K2Q8NGT1 345 aa7.96□□□□□ -1.14
CUX1-221ENST00000622516 CITED2Q99967 270 aaPredicted RBP7.96□□□□□ -1.14
CUX1-221ENST00000622516 BOD1L2Q8IYS8 172 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 JPT2Q9H910 190 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 MGPP08493 103 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 LGALS1P09382 135 aaKnown RBP7.95□□□□□ -1.14
CUX1-221ENST00000622516 ASIPP42127 132 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 IFI27L1Q96BM0 104 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 RPL39LQ96EH5 51 aaKnown RBP7.95□□□□□ -1.14
CUX1-221ENST00000622516 FAM19A4Q96LR4 140 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 DKK2Q9UBU2 259 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 ZNF580Q9UK33 172 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 LENEPQ9Y5L5 61 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 RNASE3P12724 160 aaKnown RBP7.95□□□□□ -1.14
CUX1-221ENST00000622516 ID1P41134 155 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 CKS1BP61024 79 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 NRACQ8N912 160 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 TMEM158Q8WZ71 300 aa7.95□□□□□ -1.14
CUX1-221ENST00000622516 TRBV7-9A0A0J9YWB2 115 aa7.94□□□□□ -1.14
CUX1-221ENST00000622516 SPINK13Q1W4C9 94 aa7.94□□□□□ -1.14
CUX1-221ENST00000622516 HTN1P15515 57 aa7.94□□□□□ -1.14
CUX1-221ENST00000622516 ADAMTSL5Q6ZMM2 481 aa7.94□□□□□ -1.14
CUX1-221ENST00000622516 ELANEP08246 267 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 CD7P09564 240 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 TCTEX1D4Q5JR98 221 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 OR11H1Q8NG94 326 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 UBE2E2Q96LR5 201 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 KMT2BQ9UMN6 2715 aaPredicted RBP7.93□□□□□ -1.14
CUX1-221ENST00000622516 PRM2P04554 102 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 MPV17L2Q567V2 206 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 FAM159AQ6UWV7 190 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 ST20Q9HBF5 79 aa7.93□□□□□ -1.14
CUX1-221ENST00000622516 SETXQ7Z333 2677 aaKnown RBP7.93□□□□□ -1.14
CUX1-221ENST00000622516 A0A087WWL8 130 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 CD5LO43866 347 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 PRSS1P07477 247 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 SNRPD3P62318 126 aaKnown RBP7.92□□□□□ -1.14
CUX1-221ENST00000622516 NEGR1Q7Z3B1 354 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 SCRT2Q9NQ03 307 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 IGLV2-18A0A075B6J9 118 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 KLLNB2CW77 178 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 G3V4G9 280 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 SLC25A34Q6PIV7 304 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 LRRC75A-AS1Q8N1F1 130 aa7.92□□□□□ -1.14
CUX1-221ENST00000622516 NXT2Q9NPJ8 142 aaKnown RBP7.92□□□□□ -1.14
CUX1-221ENST00000622516 IGHV4-4A0A075B6R2 117 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms