RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CFHR4Q92496 578 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 AJUBAQ96IF1 538 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 KIR2DL4Q99706 377 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 DOPEY2Q9Y3R5 2298 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 TRAV26-2A0A0B4J265 109 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 IGKV3D-20A0A0C4DH25 116 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 IGHG4P01861 327 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 SPANXN1Q5VSR9 72 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 LYPD2Q6UXB3 125 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 CTSZQ9UBR2 303 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 PRO1854Q9UHT4 67 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 ICE1Q9Y2F5 2266 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 A0A0J9YY99 117 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 HERV-K104P63124 156 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 SHISA2Q6UWI4 295 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 C22orf34Q6ZV56 151 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 DYNAPQ8N1N2 210 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 BAALCQ8WXS3 180 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 PLEKHB2Q96CS7 222 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 SUMO2P61956 95 aaKnown RBP8.3□□□□□ -1.08
UPF3A-212ENST00000619079 CCL17Q92583 94 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 C21orf62Q9NYP8 219 aa8.3□□□□□ -1.08
UPF3A-212ENST00000619079 ANKHD1Q8IWZ3 2542 aaKnown RBP8.29□□□□□ -1.08
UPF3A-212ENST00000619079 USP9YO00507 2555 aaPredicted RBP8.29□□□□□ -1.08
UPF3A-212ENST00000619079 IGHV7-4-1A0A0J9YVY3 117 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 CFC1BP0CG36 223 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 CFC1P0CG37 223 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 RASL10AQ92737 203 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 ONECUT1Q9UBC0 465 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 UTP20O75691 2785 aaKnown RBP8.29□□□□□ -1.08
UPF3A-212ENST00000619079 IGLV11-55A0A075B6I3 123 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 LINC01548A6NM66 108 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 C2orf66Q6UXQ4 117 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 SMIM20Q8N5G0 67 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 OR10J6PQ8NGY7 276 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 TIMD4Q96H15 378 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 KLK15Q9H2R5 256 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 SMAD5-AS1Q9Y6J3 95 aa8.29□□□□□ -1.08
UPF3A-212ENST00000619079 C9JAW5 83 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 NBR2O15453 112 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 PPP1R17O96001 155 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 IGHV3-30P01768 117 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 IGHV3-30-5P0DP03 117 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 PRTN3P24158 256 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 SLC25A29Q8N8R3 303 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 LINC01600Q96MT4 127 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 PLCE1Q9P212 2302 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 TRAV4A0A0B4J268 109 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 CCDC179H3BU77 68 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 HIF1ANQ9NWT6 349 aa8.28□□□□□ -1.08
UPF3A-212ENST00000619079 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.27□□□□□ -1.09
UPF3A-212ENST00000619079 F8W735 103 aaPredicted RBP8.27□□□□□ -1.09
UPF3A-212ENST00000619079 M0R381 172 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 P0DMU3 169 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 FAM231AP0DMU4 169 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 FAM231CP0DMU5 169 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 ADIPOQQ15848 244 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 MRPL23Q16540 153 aaKnown RBP8.27□□□□□ -1.09
UPF3A-212ENST00000619079 IGFL4Q6B9Z1 124 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 HIST2H2BCQ6DN03 193 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 FANCD2OSQ96PS1 177 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 MALRD1Q5VYJ5 2156 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 PKDREJQ9NTG1 2253 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 IGHV1-69DA0A0B4J2H0 117 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 RPL13AP40429 203 aaKnown RBP8.27□□□□□ -1.09
UPF3A-212ENST00000619079 BSPH1Q075Z2 132 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 CRYBG3Q68DQ2 2970 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 MRPL53Q96EL3 112 aaKnown RBP8.27□□□□□ -1.09
UPF3A-212ENST00000619079 C11orf21Q9P2W6 132 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 S4R3C0 116 aa8.27□□□□□ -1.09
UPF3A-212ENST00000619079 TRAV8-4A0A0B4J246 113 aa8.26□□□□□ -1.09
UPF3A-212ENST00000619079 ATXN8Q156A1 80 aa8.26□□□□□ -1.09
UPF3A-212ENST00000619079 PRAC2D3DTV9 90 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 CD3EP07766 207 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 KLHL30-AS1Q8NEE0 82 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 NPBQ8NG41 125 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 DPH3P1Q9H4G8 78 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 A0A0B4J2C4 111 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 LY6LH3BQJ8 138 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 TIMM23O14925 209 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 TGFAP01135 160 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 ARL3P36405 182 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 Q8N1Y9 231 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 AGPAT4-IT1Q9H0P7 198 aa8.25□□□□□ -1.09
UPF3A-212ENST00000619079 COX7A1P24310 79 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 NTN5Q8WTR8 489 aaPredicted RBP8.24□□□□□ -1.09
UPF3A-212ENST00000619079 TMEM126AQ9H061 195 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 TNFRSF18Q9Y5U5 241 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 C11orf86A6NJI1 115 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 CRLF1O75462 422 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 CTSGP08311 255 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 FAM159AQ6UWV7 190 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 PTPN13Q12923 2485 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 NBPF19A0A087WUL8 3843 aa8.24□□□□□ -1.09
UPF3A-212ENST00000619079 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.23□□□□□ -1.09
UPF3A-212ENST00000619079 IGHV3-33P01772 117 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 CLEC3BP05452 202 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 PMVKQ15126 192 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 TMEM141Q96I45 108 aa8.23□□□□□ -1.09
UPF3A-212ENST00000619079 MDFICQ9P1T7 246 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms