RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 SPTAN1Q13813 2472 aaKnown RBP9.09□□□□□ -0.95
TPM3-223ENST00000611659 IGKV3-7A0A075B6H7 116 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 IGHV4-4A0A075B6R2 117 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 C11orf86A6NJI1 115 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 LYRM7Q5U5X0 104 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 NDUFA11Q86Y39 141 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 Q8N9W7 124 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 CCDC140Q96MF4 163 aa9.09□□□□□ -0.95
TPM3-223ENST00000611659 A8MWV9 139 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 GRNP28799 593 aaKnown RBP9.08□□□□□ -0.96
TPM3-223ENST00000611659 TMEM170BQ5T4T1 132 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 C9orf47Q6ZRZ4 202 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 RNF183Q96D59 192 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 ANKHD1Q8IWZ3 2542 aaKnown RBP9.08□□□□□ -0.96
TPM3-223ENST00000611659 IGF2RP11717 2491 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 H7C2G1 150 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 Q6ZS46 218 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 SVIPQ8NHG7 77 aa9.08□□□□□ -0.96
TPM3-223ENST00000611659 M0R1W7 72 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 CD7P09564 240 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 GATA3P23771 443 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 ASIPP42127 132 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 UBE2D3P61077 147 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 HERVK_113P61574 105 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 UBE2D2P62837 147 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 RPL11P62913 178 aaKnown RBP9.07□□□□□ -0.96
TPM3-223ENST00000611659 FAM110DQ8TAY7 271 aaPredicted RBP9.07□□□□□ -0.96
TPM3-223ENST00000611659 RAX2Q96IS3 184 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 COX6B1P14854 86 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 Q8N6K4 173 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 TP53TG1Q9Y2A0 90 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 A0A0J9YY99 117 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 GNRH2O43555 120 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 RNASE4P34096 147 aaKnown RBP9.07□□□□□ -0.96
TPM3-223ENST00000611659 ANXA2RQ3ZCQ2 193 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 ANKRD29Q8N6D5 301 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 C20orf173Q96LM9 149 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 ANAPC13Q9BS18 74 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 LINC00527Q9UJ94 153 aa9.07□□□□□ -0.96
TPM3-223ENST00000611659 CRYGDP07320 174 aa9.06□□□□□ -0.96
TPM3-223ENST00000611659 ZNF688P0C7X2 276 aa9.06□□□□□ -0.96
TPM3-223ENST00000611659 CFC1BP0CG36 223 aa9.06□□□□□ -0.96
TPM3-223ENST00000611659 CFC1P0CG37 223 aa9.06□□□□□ -0.96
TPM3-223ENST00000611659 RPL39P62891 51 aaKnown RBP9.06□□□□□ -0.96
TPM3-223ENST00000611659 Q8NA96 180 aa9.06□□□□□ -0.96
TPM3-223ENST00000611659 EEF1AKMT3Q96AZ1 226 aa9.06□□□□□ -0.96
TPM3-223ENST00000611659 TRAV21A0A0B4J279 112 aa9.05□□□□□ -0.96
TPM3-223ENST00000611659 PTPRQQ9UMZ3 2332 aa9.05□□□□□ -0.96
TPM3-223ENST00000611659 OR10J6PQ8NGY7 276 aa9.05□□□□□ -0.96
TPM3-223ENST00000611659 COL12A1Q99715 3063 aa9.05□□□□□ -0.96
TPM3-223ENST00000611659 RNF223E7ERA6 249 aa9.05□□□□□ -0.96
TPM3-223ENST00000611659 F6UB75 175 aa9.05□□□□□ -0.96
TPM3-223ENST00000611659 MRPL53Q96EL3 112 aaKnown RBP9.05□□□□□ -0.96
TPM3-223ENST00000611659 IGLV4-69A0A075B6H9 119 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 TRBV20-1A0A075B6N2 111 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 F5H697 171 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 TSPEAR-AS2P59090 65 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 C9JAW5 83 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 C10orf126Q8N4M7 172 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 ZFAND2AQ8N6M9 145 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 SS18L2Q9UHA2 77 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 PRO1854Q9UHT4 67 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 ERG28Q9UKR5 140 aa9.04□□□□□ -0.96
TPM3-223ENST00000611659 MAP1AP78559 2803 aaPredicted RBP9.04□□□□□ -0.96
TPM3-223ENST00000611659 IGHV3-64A0A075B6Q5 118 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 TSHBP01222 138 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 ZFAND6Q6FIF0 208 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 TEX29Q8N6K0 151 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 IGHV3-30P01768 117 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 IGHV3-30-5P0DP03 117 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 FOXC1Q12948 553 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 EBI3Q14213 229 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 TRPT1Q86TN4 253 aaKnown RBP9.03□□□□□ -0.96
TPM3-223ENST00000611659 JPT2Q9H910 190 aa9.03□□□□□ -0.96
TPM3-223ENST00000611659 A0A087WWL8 130 aa9.02□□□□□ -0.96
TPM3-223ENST00000611659 ZFP36P26651 326 aaKnown RBP9.02□□□□□ -0.96
TPM3-223ENST00000611659 PMVKQ15126 192 aa9.02□□□□□ -0.96
TPM3-223ENST00000611659 C9orf139Q6ZV77 190 aa9.02□□□□□ -0.96
TPM3-223ENST00000611659 SLC25A20O43772 301 aa9.02□□□□□ -0.97
TPM3-223ENST00000611659 LGALS3P17931 250 aaKnown RBP9.02□□□□□ -0.97
TPM3-223ENST00000611659 CRIP2P52943 208 aaPredicted RBP9.02□□□□□ -0.97
TPM3-223ENST00000611659 MINOS1Q5TGZ0 78 aa9.02□□□□□ -0.97
TPM3-223ENST00000611659 GPHB5Q86YW7 130 aa9.02□□□□□ -0.97
TPM3-223ENST00000611659 LINC00477Q96M19 166 aa9.02□□□□□ -0.97
TPM3-223ENST00000611659 MINOS1-NBL1R4GNA1 71 aa9.02□□□□□ -0.97
TPM3-223ENST00000611659 Q1RN00 199 aa9.02□□□□□ -0.97
TPM3-223ENST00000611659 TRBV7-1A0A0A6YYK4 115 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 TRAV2A0A0B4J234 112 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 OOSP1A8MZH6 123 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 TCF15Q12870 199 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 PAPPA-AS1Q5QFB9 102 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 IGF2-ASQ6U949 168 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 VCX2Q9H322 139 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 A4D1N5 150 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 FAM74A4Q5TZK3 123 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 TMEM219Q86XT9 240 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 SLC25A29Q8N8R3 303 aa9.01□□□□□ -0.97
TPM3-223ENST00000611659 BEX4Q9NWD9 120 aaPredicted RBP9.01□□□□□ -0.97
TPM3-223ENST00000611659 ZNF256Q9Y2P7 627 aaPredicted RBP9.01□□□□□ -0.97
TPM3-223ENST00000611659 J3QQQ9 107 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms