RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LGALS9BQ3B8N2 356 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 FER1L6-AS1Q8NA97 138 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 GTSF1Q8WW33 167 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 PTH2Q96A98 100 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 NOP10Q9NPE3 64 aaKnown RBP10.27□□□□□ -0.77
UPF1-211ENST00000600868 U3KQK5 164 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 DNAH9Q9NYC9 4486 aa10.27□□□□□ -0.77
UPF1-211ENST00000600868 A0A087WWC5 75 aa10.26□□□□□ -0.77
UPF1-211ENST00000600868 C7orf77A4D0Y5 90 aa10.26□□□□□ -0.77
UPF1-211ENST00000600868 F2Z2F3 143 aa10.26□□□□□ -0.77
UPF1-211ENST00000600868 M0R2P5 195 aa10.26□□□□□ -0.77
UPF1-211ENST00000600868 SPINK4O60575 86 aa10.26□□□□□ -0.77
UPF1-211ENST00000600868 DKK2Q9UBU2 259 aa10.26□□□□□ -0.77
UPF1-211ENST00000600868 TEX48A0A1B0GUV7 120 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 SMIM27A0A1W2PRY6 76 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 SPART-AS1P0CW21 52 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 CTRLP40313 264 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 PIK3CD-AS1Q5SR53 167 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 FAM222AQ5U5X8 452 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 LINC00612Q8N6U2 182 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 RASL10AQ92737 203 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 TMEM242Q9NWH2 141 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 PHLDA3Q9Y5J5 127 aa10.25□□□□□ -0.77
UPF1-211ENST00000600868 HUWE1Q7Z6Z7 4374 aaKnown RBP10.24□□□□□ -0.77
UPF1-211ENST00000600868 HIGD1CA8MV81 97 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 NXPH4O95158 308 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 WDR73Q6P4I2 378 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 LYZL1Q6UWQ5 148 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 ZFP82Q8N141 532 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 IMMP2LQ96T52 175 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 NDUFAF3Q9BU61 184 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 CNFNQ9BYD5 112 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 RPS10P5Q9NQ39 176 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 MUC4Q99102 2169 aa10.24□□□□□ -0.77
UPF1-211ENST00000600868 IGHV4-4A0A075B6R2 117 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 TRGV1A0A0A0MS02 117 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 CACNG7P62955 275 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 ZNF876PQ49A33 203 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 Q6ZTI0 123 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 SYT8Q8NBV8 401 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 NUP35Q8NFH5 326 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 OR10AG1Q8NH19 301 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 TPPP3Q9BW30 176 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 NAT8BQ9UHF3 227 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 CELA1Q9UNI1 258 aa10.23□□□□□ -0.77
UPF1-211ENST00000600868 CXorf65A6NEN9 183 aa10.22□□□□□ -0.77
UPF1-211ENST00000600868 DMRTA1Q5VZB9 504 aa10.22□□□□□ -0.77
UPF1-211ENST00000600868 PGLYRP4Q96LB8 373 aa10.22□□□□□ -0.77
UPF1-211ENST00000600868 C18orf15Q96N68 181 aa10.22□□□□□ -0.77
UPF1-211ENST00000600868 EDA2RQ9HAV5 297 aa10.22□□□□□ -0.77
UPF1-211ENST00000600868 MRPL16Q9NX20 251 aaKnown RBP10.22□□□□□ -0.77
UPF1-211ENST00000600868 GAGE12BA1L429 117 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 M0R381 172 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 ATP6V1G1O75348 118 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 GAGE7O76087 117 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 GAGE12FP0CL80 117 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 GAGE12GP0CL81 117 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 GAGE12IP0CL82 117 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 SPANXN1Q5VSR9 72 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 ATRAIDQ6UW56 229 aa10.21□□□□□ -0.77
UPF1-211ENST00000600868 MUC21A0A0G2JKD1 596 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 MUC21A0A140T8X8 626 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 A0A1B0GUT8 65 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 DEFB130BP0DP73 79 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 DEFB130AP0DP74 79 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 S100A1P23297 94 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 DAD1P61803 113 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 C12orf74Q32Q52 190 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 C11orf45Q8TAV5 145 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 BORCS7Q96B45 105 aa10.2□□□□□ -0.78
UPF1-211ENST00000600868 TRGV2A0A075B6R0 118 aa10.19□□□□□ -0.78
UPF1-211ENST00000600868 A8MWV9 139 aa10.19□□□□□ -0.78
UPF1-211ENST00000600868 NTF3P20783 257 aa10.19□□□□□ -0.78
UPF1-211ENST00000600868 FAM3BP58499 235 aaPredicted RBP10.19□□□□□ -0.78
UPF1-211ENST00000600868 KCNIP4Q6PIL6 250 aa10.19□□□□□ -0.78
UPF1-211ENST00000600868 STAB2Q8WWQ8 2551 aa10.19□□□□□ -0.78
UPF1-211ENST00000600868 TRAV4A0A0B4J268 109 aa10.18□□□□□ -0.78
UPF1-211ENST00000600868 RS1O15537 224 aa10.18□□□□□ -0.78
UPF1-211ENST00000600868 SSTP61278 116 aa10.18□□□□□ -0.78
UPF1-211ENST00000600868 RIGQ13278 110 aa10.18□□□□□ -0.78
UPF1-211ENST00000600868 TRAV9-1A0A075B6T8 112 aa10.17□□□□□ -0.78
UPF1-211ENST00000600868 S100PP25815 95 aa10.17□□□□□ -0.78
UPF1-211ENST00000600868 NANOS2P60321 138 aaKnown RBP10.17□□□□□ -0.78
UPF1-211ENST00000600868 TWIST1Q15672 202 aa10.17□□□□□ -0.78
UPF1-211ENST00000600868 CFAP126Q5VTH2 177 aa10.17□□□□□ -0.78
UPF1-211ENST00000600868 POM121L12Q8N7R1 296 aa10.17□□□□□ -0.78
UPF1-211ENST00000600868 MSRB1Q9NZV6 116 aa10.17□□□□□ -0.78
UPF1-211ENST00000600868 A0A1B0GW15 77 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 CIDEAO60543 219 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 TRGC1P0CF51 173 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 ATP5L2Q7Z4Y8 100 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 OR4C5Q8NGB2 326 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 BTF3L4Q96K17 158 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 AP1S3Q96PC3 154 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 JPT2Q9H910 190 aa10.16□□□□□ -0.78
UPF1-211ENST00000600868 A0A1B0GXF2 115 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 ATP5G1P05496 136 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 CRYGDP07320 174 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 UFSP1Q6NVU6 142 aa10.15□□□□□ -0.78
UPF1-211ENST00000600868 ZFP2Q6ZN57 461 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms