RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 IFNA1P01562 189 aa12.86□□□□□ -0.35
PNKP-213ENST00000599543 PFN1P07737 140 aaKnown RBP12.86□□□□□ -0.35
PNKP-213ENST00000599543 BCL2P10415 239 aa12.86□□□□□ -0.35
PNKP-213ENST00000599543 LINC00315P59091 139 aa12.86□□□□□ -0.35
PNKP-213ENST00000599543 MAPKAPK5-AS1Q8N8E1 139 aa12.86□□□□□ -0.35
PNKP-213ENST00000599543 TCEAL7Q9BRU2 100 aa12.86□□□□□ -0.35
PNKP-213ENST00000599543 HHLA3Q9XRX5 114 aa12.86□□□□□ -0.35
PNKP-213ENST00000599543 TRGV11A0A075B6L2 103 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 IGHV3-16A0A0C4DH30 117 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 M0R036 132 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 SH2D1AO60880 128 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 NXPH4O95158 308 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 LTAP01374 205 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 BLOC1S1P78537 153 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 SDF2L1Q9HCN8 221 aa12.85□□□□□ -0.35
PNKP-213ENST00000599543 CRYBA4P53673 196 aa12.84□□□□□ -0.35
PNKP-213ENST00000599543 MEF2BQ02080 365 aaPredicted RBP12.84□□□□□ -0.35
PNKP-213ENST00000599543 TDRG1Q3Y452 100 aa12.84□□□□□ -0.35
PNKP-213ENST00000599543 ZFP30Q9Y2G7 519 aa12.84□□□□□ -0.35
PNKP-213ENST00000599543 TMSB15BA0A087X1C1 80 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 TRGV4A0A0C4DH28 118 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 TRBV6-1A0A0K0K1D8 114 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 RAB19A4D1S5 217 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 RPL35P42766 123 aaKnown RBP12.83□□□□□ -0.36
PNKP-213ENST00000599543 KRTAP10-2P60368 255 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 FHL2Q14192 279 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 MRPL23Q16540 153 aaKnown RBP12.83□□□□□ -0.36
PNKP-213ENST00000599543 BAGE2Q86Y30 109 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 C11orf52Q96A22 123 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 VAX2Q9UIW0 290 aa12.83□□□□□ -0.36
PNKP-213ENST00000599543 IGKV3D-20A0A0C4DH25 116 aa12.82□□□□□ -0.36
PNKP-213ENST00000599543 FABP5P3A8MUU1 101 aa12.82□□□□□ -0.36
PNKP-213ENST00000599543 ORM1P02763 201 aa12.82□□□□□ -0.36
PNKP-213ENST00000599543 KCNS1Q96KK3 526 aa12.82□□□□□ -0.36
PNKP-213ENST00000599543 GRIFINA4D1Z8 144 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 SFTA3P0C7M3 94 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 FAM162BQ5T6X4 162 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 PRR27Q6MZM9 219 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 LYPD5Q6UWN5 251 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 NEGR1Q7Z3B1 354 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 SPXQ9BT56 116 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 MED9Q9NWA0 146 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 DNAH5Q8TE73 4624 aa12.81□□□□□ -0.36
PNKP-213ENST00000599543 APOBP04114 4563 aaKnown RBP12.81□□□□□ -0.36
PNKP-213ENST00000599543 B4DEV8 164 aa12.8□□□□□ -0.36
PNKP-213ENST00000599543 S100A9P06702 114 aaKnown RBP12.8□□□□□ -0.36
PNKP-213ENST00000599543 SRIP30626 198 aa12.8□□□□□ -0.36
PNKP-213ENST00000599543 CENPWQ5EE01 88 aa12.8□□□□□ -0.36
PNKP-213ENST00000599543 TEX261Q6UWH6 196 aa12.8□□□□□ -0.36
PNKP-213ENST00000599543 RASL10AQ92737 203 aa12.8□□□□□ -0.36
PNKP-213ENST00000599543 ZNF479Q96JC4 524 aa12.8□□□□□ -0.36
PNKP-213ENST00000599543 RBFOX3A6NFN3 312 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 PGPEP1LA6NFU8 196 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 C9JCJ5 164 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 PDE6DO43924 150 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 RPL19P84098 196 aaKnown RBP12.79□□□□□ -0.36
PNKP-213ENST00000599543 ZNF674Q2M3X9 581 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 TOR2AQ5JU69 321 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 Q6ZRN7 208 aaPredicted RBP12.79□□□□□ -0.36
PNKP-213ENST00000599543 COX8CQ7Z4L0 72 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 LYPD6BQ8NI32 183 aa12.79□□□□□ -0.36
PNKP-213ENST00000599543 KRBOX1C9JBD0 128 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 K7EQD1 137 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 EREGO14944 169 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 MGST1P10620 155 aaKnown RBP12.78□□□□□ -0.36
PNKP-213ENST00000599543 RNASE3P12724 160 aaKnown RBP12.78□□□□□ -0.36
PNKP-213ENST00000599543 CEBPGP53567 150 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 ERVFC1-1P60608 527 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 TXNDC17Q9BRA2 123 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 MLST8Q9BVC4 326 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 LY96Q9Y6Y9 160 aa12.78□□□□□ -0.36
PNKP-213ENST00000599543 TRBV20OR9-2A0A075B6H5 130 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 TRAV9-2A0A087WT02 112 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 H3BVH4 76 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 M0R2P5 195 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 GYPEP15421 78 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 NFE4Q86UQ8 179 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 Q8N1X5 172 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 C9orf85Q96MD7 179 aa12.77□□□□□ -0.37
PNKP-213ENST00000599543 IGLV2-8P01709 118 aa12.76□□□□□ -0.37
PNKP-213ENST00000599543 S100A4P26447 101 aaKnown RBP12.76□□□□□ -0.37
PNKP-213ENST00000599543 ASIPP42127 132 aa12.76□□□□□ -0.37
PNKP-213ENST00000599543 ZNF506Q5JVG8 444 aa12.76□□□□□ -0.37
PNKP-213ENST00000599543 EIF5A2Q9GZV4 153 aaKnown RBP12.76□□□□□ -0.37
PNKP-213ENST00000599543 TRAV4A0A0B4J268 109 aa12.75□□□□□ -0.37
PNKP-213ENST00000599543 GNG4P50150 75 aa12.75□□□□□ -0.37
PNKP-213ENST00000599543 ZNF876PQ49A33 203 aa12.75□□□□□ -0.37
PNKP-213ENST00000599543 OR4C5Q8NGB2 326 aa12.75□□□□□ -0.37
PNKP-213ENST00000599543 SCRT2Q9NQ03 307 aa12.75□□□□□ -0.37
PNKP-213ENST00000599543 TAGLN2P37802 199 aaKnown RBP12.74□□□□□ -0.37
PNKP-213ENST00000599543 WFDC10BQ8IUB3 73 aa12.74□□□□□ -0.37
PNKP-213ENST00000599543 TNFRSF18Q9Y5U5 241 aa12.74□□□□□ -0.37
PNKP-213ENST00000599543 IGHV3-73A0A0B4J1V6 119 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 K7EP13 123 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 ARMS2P0C7Q2 107 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 EVI2AP22794 236 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 LINC01559Q495D7 138 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 FAM210AQ96ND0 272 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 PARLQ9H300 379 aa12.73□□□□□ -0.37
PNKP-213ENST00000599543 PGPEP1Q9NXJ5 209 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms