RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SMIM27A0A1W2PRY6 76 aa10.72□□□□□ -0.69
TRIM28-207ENST00000597136 FAM231BA6NCW3 169 aa10.72□□□□□ -0.69
TRIM28-207ENST00000597136 IGLC6P0CF74 106 aa10.72□□□□□ -0.69
TRIM28-207ENST00000597136 S100A4P26447 101 aaKnown RBP10.72□□□□□ -0.69
TRIM28-207ENST00000597136 ZNF493Q6ZR52 646 aa10.72□□□□□ -0.69
TRIM28-207ENST00000597136 IL36BQ9NZH7 164 aa10.72□□□□□ -0.69
TRIM28-207ENST00000597136 A0A1W2PPQ1 181 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 H3BVH4 76 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 ARMS2P0C7Q2 107 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 FOXA3P55318 350 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-207ENST00000597136 TCL1AP56279 114 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 FER1L6-AS1Q8NA97 138 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 C11orf45Q8TAV5 145 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 C16orf74Q96GX8 76 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 SSBP4Q9BWG4 385 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-207ENST00000597136 GSN-AS1Q9NRJ2 163 aa10.71□□□□□ -0.69
TRIM28-207ENST00000597136 HIGD1CA8MV81 97 aa10.7□□□□□ -0.7
TRIM28-207ENST00000597136 ZNF415Q09FC8 603 aa10.7□□□□□ -0.7
TRIM28-207ENST00000597136 C9orf85Q96MD7 179 aa10.7□□□□□ -0.7
TRIM28-207ENST00000597136 IMMP2LQ96T52 175 aa10.7□□□□□ -0.7
TRIM28-207ENST00000597136 TPPP3Q9BW30 176 aa10.7□□□□□ -0.7
TRIM28-207ENST00000597136 SCRT2Q9NQ03 307 aa10.7□□□□□ -0.7
TRIM28-207ENST00000597136 TIMM8BQ9Y5J9 83 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-207ENST00000597136 PLAC8L1A1L4L8 177 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 SNAI2O43623 268 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 OR5AL1P0C617 328 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 MED14OSP0DP75 135 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 CASC10Q5T4H9 136 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 LYZL1Q6UWQ5 148 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 NUP35Q8NFH5 326 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 NAT8BQ9UHF3 227 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 CXorf65A6NEN9 183 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 F2Z2F3 143 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 C3orf84H3BNL1 204 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 CTRLP40313 264 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 FAM3BP58499 235 aaPredicted RBP10.69□□□□□ -0.7
TRIM28-207ENST00000597136 PGLYRP4Q96LB8 373 aa10.69□□□□□ -0.7
TRIM28-207ENST00000597136 C12orf74Q32Q52 190 aa10.68□□□□□ -0.7
TRIM28-207ENST00000597136 FAM222AQ5U5X8 452 aa10.68□□□□□ -0.7
TRIM28-207ENST00000597136 SPXQ9BT56 116 aa10.68□□□□□ -0.7
TRIM28-207ENST00000597136 DYNC2H1Q8NCM8 4307 aaKnown RBP10.67□□□□□ -0.7
TRIM28-207ENST00000597136 MUC21A0A0G2JKD1 596 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 MUC21A0A140T8X8 626 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 SNURFLB1AK76 121 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 DAZ2Q13117 558 aaKnown RBP10.67□□□□□ -0.7
TRIM28-207ENST00000597136 OR10AG1Q8NH19 301 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 DKK2Q9UBU2 259 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 PHLDA3Q9Y5J5 127 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 URGCP-MRPS24S4R325 110 aa10.67□□□□□ -0.7
TRIM28-207ENST00000597136 SCO1O75880 301 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 S100PP25815 95 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 TMEM88Q6PEY1 159 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 KCNIP4Q6PIL6 250 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 CBLN2Q8IUK8 224 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 CNFNQ9BYD5 112 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 NOP10Q9NPE3 64 aaKnown RBP10.66□□□□□ -0.7
TRIM28-207ENST00000597136 SMCO4Q9NRQ5 59 aa10.66□□□□□ -0.7
TRIM28-207ENST00000597136 M0R2P5 195 aa10.65□□□□□ -0.7
TRIM28-207ENST00000597136 SPART-AS1P0CW21 52 aa10.65□□□□□ -0.7
TRIM28-207ENST00000597136 SSTP61278 116 aa10.65□□□□□ -0.7
TRIM28-207ENST00000597136 WDR73Q6P4I2 378 aa10.65□□□□□ -0.7
TRIM28-207ENST00000597136 Q6ZTC4 211 aa10.65□□□□□ -0.7
TRIM28-207ENST00000597136 PHLDA1Q8WV24 401 aaPredicted RBP10.65□□□□□ -0.7
TRIM28-207ENST00000597136 PLECQ15149 4684 aaKnown RBP10.65□□□□□ -0.7
TRIM28-207ENST00000597136 A0A1B0GUT8 65 aa10.65□□□□□ -0.71
TRIM28-207ENST00000597136 NXPH4O95158 308 aa10.65□□□□□ -0.71
TRIM28-207ENST00000597136 CACNG7P62955 275 aa10.65□□□□□ -0.71
TRIM28-207ENST00000597136 SPANXN1Q5VSR9 72 aa10.65□□□□□ -0.71
TRIM28-207ENST00000597136 DMRTA1Q5VZB9 504 aa10.65□□□□□ -0.71
TRIM28-207ENST00000597136 PTH2Q96A98 100 aa10.65□□□□□ -0.71
TRIM28-207ENST00000597136 LYSTQ99698 3801 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 IGHV4-4A0A075B6R2 117 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 TRAV9-1A0A075B6T8 112 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 M0R381 172 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 SPINK4O60575 86 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 NTF3P20783 257 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 ZNF876PQ49A33 203 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 ZFP82Q8N141 532 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 BORCS7Q96B45 105 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 BTF3L4Q96K17 158 aa10.64□□□□□ -0.71
TRIM28-207ENST00000597136 ELOBQ15370 118 aa10.63□□□□□ -0.71
TRIM28-207ENST00000597136 LGALS9BQ3B8N2 356 aa10.63□□□□□ -0.71
TRIM28-207ENST00000597136 Q6ZTI0 123 aa10.63□□□□□ -0.71
TRIM28-207ENST00000597136 RASL10AQ92737 203 aa10.63□□□□□ -0.71
TRIM28-207ENST00000597136 YPEL4Q96NS1 127 aa10.63□□□□□ -0.71
TRIM28-207ENST00000597136 MRPL16Q9NX20 251 aaKnown RBP10.63□□□□□ -0.71
TRIM28-207ENST00000597136 MSRB1Q9NZV6 116 aa10.63□□□□□ -0.71
TRIM28-207ENST00000597136 TRGV1A0A0A0MS02 117 aa10.62□□□□□ -0.71
TRIM28-207ENST00000597136 RIGQ13278 110 aa10.62□□□□□ -0.71
TRIM28-207ENST00000597136 TWIST1Q15672 202 aa10.62□□□□□ -0.71
TRIM28-207ENST00000597136 PIK3CD-AS1Q5SR53 167 aa10.62□□□□□ -0.71
TRIM28-207ENST00000597136 MRPL54Q6P161 138 aaKnown RBP10.62□□□□□ -0.71
TRIM28-207ENST00000597136 CEMP1Q6PRD7 247 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-207ENST00000597136 SYT8Q8NBV8 401 aa10.62□□□□□ -0.71
TRIM28-207ENST00000597136 LYRM9A8MSI8 78 aa10.61□□□□□ -0.71
TRIM28-207ENST00000597136 DEFB130BP0DP73 79 aa10.61□□□□□ -0.71
TRIM28-207ENST00000597136 DEFB130AP0DP74 79 aa10.61□□□□□ -0.71
TRIM28-207ENST00000597136 ATP5L2Q7Z4Y8 100 aa10.61□□□□□ -0.71
TRIM28-207ENST00000597136 TGIF2-C20orf24A0A0A6YYL0 155 aa10.6□□□□□ -0.71
TRIM28-207ENST00000597136 A0A1B0GXF2 115 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms