RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 XCL2Q9UBD3 114 aa9.82□□□□□ -0.84
VMP1-217ENST00000593168 SACSQ9NZJ4 4579 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 TRGV11A0A075B6L2 103 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 IGHV4-4A0A075B6R2 117 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 C1orf196B1AJZ1 125 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 SNURFLB1AK76 121 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 HLA-DQA1P01909 254 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 TRGC2P03986 189 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 GIG44P09565 113 aaPredicted RBP9.81□□□□□ -0.84
VMP1-217ENST00000593168 RNASE3P12724 160 aaKnown RBP9.81□□□□□ -0.84
VMP1-217ENST00000593168 S100A4P26447 101 aaKnown RBP9.81□□□□□ -0.84
VMP1-217ENST00000593168 TMEM136Q6ZRR5 245 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 GATD1Q8NB37 220 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 LINC01587Q99440 93 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 TRAPPC1Q9Y5R8 145 aa9.81□□□□□ -0.84
VMP1-217ENST00000593168 IGHV3-16A0A0C4DH30 117 aa9.8□□□□□ -0.84
VMP1-217ENST00000593168 H3BVH4 76 aa9.8□□□□□ -0.84
VMP1-217ENST00000593168 PHOX2AO14813 284 aa9.8□□□□□ -0.84
VMP1-217ENST00000593168 CAMPP49913 170 aa9.8□□□□□ -0.84
VMP1-217ENST00000593168 C1orf158Q8N1D5 194 aa9.8□□□□□ -0.84
VMP1-217ENST00000593168 CSTL1Q9H114 145 aa9.8□□□□□ -0.84
VMP1-217ENST00000593168 LOC102724200A0A096LPH7 203 aaPredicted RBP9.79□□□□□ -0.84
VMP1-217ENST00000593168 CBY3A6NI87 242 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 NTF3P20783 257 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 RAB4BP61018 213 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 RAB5BP61020 215 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 FABP9Q0Z7S8 132 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 CSNK1G2-AS1Q8NCQ2 148 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 TP53TG3Q9ULZ0 132 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 GOLT1BQ9Y3E0 138 aa9.79□□□□□ -0.84
VMP1-217ENST00000593168 KIR2DL5BA0A0G2JN68 375 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 KIR2DL5BA0A0G2JPC4 375 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 TWIST1Q15672 202 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 SPANXN1Q5VSR9 72 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 ZNF493Q6ZR52 646 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 KIR2DL5AQ8N109 375 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 OR10AG1Q8NH19 301 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 KIR2DL5BQ8NHK3 375 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 FRZBQ92765 325 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 C9orf85Q96MD7 179 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 LYSTQ99698 3801 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 TMEM208Q9BTX3 173 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 MRPL18Q9H0U6 180 aaKnown RBP9.78□□□□□ -0.84
VMP1-217ENST00000593168 PHLDA3Q9Y5J5 127 aa9.78□□□□□ -0.84
VMP1-217ENST00000593168 MUC21A0A0G2JKD1 596 aa9.77□□□□□ -0.85
VMP1-217ENST00000593168 MUC21A0A140T8X8 626 aa9.77□□□□□ -0.85
VMP1-217ENST00000593168 MDFICQ9P1T7 246 aa9.77□□□□□ -0.85
VMP1-217ENST00000593168 TMA7Q9Y2S6 64 aaKnown RBP9.77□□□□□ -0.85
VMP1-217ENST00000593168 A8MZ25 164 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 NXPH4O95158 308 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 APCSP02743 223 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 APOC4P55056 127 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 SSTP61278 116 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 ZFP82Q8N141 532 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 TMEM191AQ9H0A3 160 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 MSRB1Q9NZV6 116 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 TIMM8BQ9Y5J9 83 aaPredicted RBP9.76□□□□□ -0.85
VMP1-217ENST00000593168 U3KQK5 164 aa9.76□□□□□ -0.85
VMP1-217ENST00000593168 HUWE1Q7Z6Z7 4374 aaKnown RBP9.75□□□□□ -0.85
VMP1-217ENST00000593168 TRGC1P0CF51 173 aa9.75□□□□□ -0.85
VMP1-217ENST00000593168 IGHV4-30-4P0DP06 118 aa9.75□□□□□ -0.85
VMP1-217ENST00000593168 HTN1P15515 57 aa9.75□□□□□ -0.85
VMP1-217ENST00000593168 ZNF415Q09FC8 603 aa9.75□□□□□ -0.85
VMP1-217ENST00000593168 SLAQ13239 276 aa9.75□□□□□ -0.85
VMP1-217ENST00000593168 ZNF705AQ6ZN79 300 aaPredicted RBP9.75□□□□□ -0.85
VMP1-217ENST00000593168 PTH2Q96A98 100 aa9.75□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BKO60814 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BJP06899 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 NHLRC4P0CG21 123 aaPredicted RBP9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BOP23527 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BBP33778 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BDP58876 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BCP62807 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST2H2BEQ16778 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.74□□□□□ -0.85
VMP1-217ENST00000593168 DMRTA1Q5VZB9 504 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 FAM104BQ5XKR9 115 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 SMIM15Q7Z3B0 74 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 C11orf72Q8NBR9 251 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BHQ93079 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BNQ99877 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 HIST1H2BMQ99879 126 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 SPXQ9BT56 116 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 MUC4Q99102 2169 aa9.74□□□□□ -0.85
VMP1-217ENST00000593168 TENM2Q9NT68 2774 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 DNAH1Q9P2D7 4330 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 IGHV3OR16-12A0A075B7B8 117 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 C3orf84H3BNL1 204 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 M0R381 172 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 UBE2CO00762 179 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 SPRY2O43597 315 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 PRM2P04554 102 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 PIK3CD-AS1Q5SR53 167 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 SYT8Q8NBV8 401 aa9.73□□□□□ -0.85
VMP1-217ENST00000593168 AZU1P20160 251 aa9.72□□□□□ -0.85
VMP1-217ENST00000593168 RNASE8Q8TDE3 154 aaKnown RBP9.72□□□□□ -0.85
VMP1-217ENST00000593168 TMEM263Q8WUH6 116 aaKnown RBP9.72□□□□□ -0.85
VMP1-217ENST00000593168 GSN-AS1Q9NRJ2 163 aa9.72□□□□□ -0.85
VMP1-217ENST00000593168 STAB2Q8WWQ8 2551 aa9.71□□□□□ -0.85
VMP1-217ENST00000593168 STARD9Q9P2P6 4700 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms