RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 DPH3P1Q9H4G8 78 aa14.7□□□□□ -0.06
CLIP3-206ENST00000593074 PDZD2O15018 2839 aa14.7□□□□□ -0.06
CLIP3-206ENST00000593074 ADAMTSL5Q6ZMM2 481 aa14.69□□□□□ -0.06
CLIP3-206ENST00000593074 GOLT1BQ9Y3E0 138 aa14.69□□□□□ -0.06
CLIP3-206ENST00000593074 C7orf71A4D174 169 aa14.69□□□□□ -0.06
CLIP3-206ENST00000593074 SPRY2O43597 315 aa14.69□□□□□ -0.06
CLIP3-206ENST00000593074 BATFQ16520 125 aa14.69□□□□□ -0.06
CLIP3-206ENST00000593074 TCTEX1D4Q5JR98 221 aa14.68□□□□□ -0.06
CLIP3-206ENST00000593074 FAM159AQ6UWV7 190 aa14.68□□□□□ -0.06
CLIP3-206ENST00000593074 C4orf3Q8WVX3 66 aa14.68□□□□□ -0.06
CLIP3-206ENST00000593074 TLN2Q9Y4G6 2542 aa14.68□□□□□ -0.06
CLIP3-206ENST00000593074 LINC01619G3V211 115 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 SLURP1P55000 103 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 DEFB136Q30KP8 78 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 DPF1Q92782 380 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 AP1S3Q96PC3 154 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 SLC25A34Q6PIV7 304 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 ESM1Q9NQ30 184 aa14.67□□□□□ -0.06
CLIP3-206ENST00000593074 KHDC1LQ5JSQ8 128 aa14.66□□□□□ -0.06
CLIP3-206ENST00000593074 C14orf178Q8N769 122 aaPredicted RBP14.66□□□□□ -0.06
CLIP3-206ENST00000593074 OR11H1Q8NG94 326 aa14.66□□□□□ -0.06
CLIP3-206ENST00000593074 WFDC12Q8WWY7 111 aa14.66□□□□□ -0.06
CLIP3-206ENST00000593074 TMEM158Q8WZ71 300 aa14.66□□□□□ -0.06
CLIP3-206ENST00000593074 TP73-AS1Q9UF72 201 aa14.66□□□□□ -0.06
CLIP3-206ENST00000593074 FLNAP21333 2647 aaKnown RBP14.66□□□□□ -0.06
CLIP3-206ENST00000593074 TRAV12-3A0A0B4J271 114 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 COL5A1-AS1Q5SY13 56 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 OR1N2Q8NGR9 330 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 FOXI2Q6ZQN5 318 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 POM121L12Q8N7R1 296 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 RASL10AQ92737 203 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 SMIM2Q9BVW6 85 aa14.65□□□□□ -0.06
CLIP3-206ENST00000593074 DUSP14O95147 198 aaKnown RBP14.64□□□□□ -0.07
CLIP3-206ENST00000593074 LAGE3Q14657 143 aa14.64□□□□□ -0.07
CLIP3-206ENST00000593074 C18orf15Q96N68 181 aa14.64□□□□□ -0.07
CLIP3-206ENST00000593074 C20orf78Q9BR46 151 aa14.64□□□□□ -0.07
CLIP3-206ENST00000593074 SONP18583 2426 aaKnown RBP14.63□□□□□ -0.07
CLIP3-206ENST00000593074 CDKN1BP46527 198 aa14.63□□□□□ -0.07
CLIP3-206ENST00000593074 SCGB2A2Q13296 93 aa14.63□□□□□ -0.07
CLIP3-206ENST00000593074 STPG4Q8N801 248 aa14.63□□□□□ -0.07
CLIP3-206ENST00000593074 TCAPO15273 167 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 CD7P09564 240 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 COX8AP10176 69 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 KLHL30-AS1Q8NEE0 82 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 MUC4Q99102 2169 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 PEMTQ9UBM1 199 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 KIF25-AS1Q9Y6Z4 181 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 IGKV3-20P01619 116 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 SMIM17P0DL12 118 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 SUMO2P61956 95 aaKnown RBP14.62□□□□□ -0.07
CLIP3-206ENST00000593074 AMTNQ6UX39 209 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 OR9G4Q8NGQ1 327 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 DUX3Q96PT4 197 aa14.62□□□□□ -0.07
CLIP3-206ENST00000593074 UNC79Q9P2D8 2635 aa14.61□□□□□ -0.07
CLIP3-206ENST00000593074 TRAV12-2A0A075B6T6 113 aa14.61□□□□□ -0.07
CLIP3-206ENST00000593074 MGPP08493 103 aa14.61□□□□□ -0.07
CLIP3-206ENST00000593074 C9orf85Q96MD7 179 aa14.61□□□□□ -0.07
CLIP3-206ENST00000593074 TRAV2A0A0B4J234 112 aa14.61□□□□□ -0.07
CLIP3-206ENST00000593074 HINT1P49773 126 aaPredicted RBP14.61□□□□□ -0.07
CLIP3-206ENST00000593074 LINC00315P59091 139 aa14.61□□□□□ -0.07
CLIP3-206ENST00000593074 MYO9AB2RTY4 2548 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 IGHV3-16A0A0C4DH30 117 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 ODF1Q14990 250 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 SPINK13Q1W4C9 94 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 ANKRD39Q53RE8 183 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 RPL39LQ96EH5 51 aaKnown RBP14.6□□□□□ -0.07
CLIP3-206ENST00000593074 DKK2Q9UBU2 259 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 ITPR2Q14571 2701 aa14.6□□□□□ -0.07
CLIP3-206ENST00000593074 K7EMI3 77 aa14.59□□□□□ -0.07
CLIP3-206ENST00000593074 ATP5LO75964 103 aa14.59□□□□□ -0.07
CLIP3-206ENST00000593074 PPP1R17O96001 155 aa14.59□□□□□ -0.07
CLIP3-206ENST00000593074 RNASE1P07998 156 aaKnown RBP14.59□□□□□ -0.07
CLIP3-206ENST00000593074 ZMAT4Q9H898 229 aa14.59□□□□□ -0.07
CLIP3-206ENST00000593074 DLX4Q92988 240 aaPredicted RBP14.59□□□□□ -0.07
CLIP3-206ENST00000593074 A8MTW9 85 aa14.58□□□□□ -0.08
CLIP3-206ENST00000593074 IGHV1OR15-1A0A075B7D0 117 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 FGF6P10767 208 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 ORMDL2Q53FV1 153 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 Q8N1Y9 231 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 TMEM160Q9NX00 188 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 PRSS1P07477 247 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 HIST2H2BDQ6DRA6 164 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 TMEM61Q8N0U2 210 aa14.57□□□□□ -0.08
CLIP3-206ENST00000593074 ZNF418Q8TF45 676 aaPredicted RBP14.57□□□□□ -0.08
CLIP3-206ENST00000593074 AKAP9Q99996 3911 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 NUDT3O95989 172 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 C16orf95Q9H693 158 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 AGRNO00468 2067 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 HLA-DRB4P13762 266 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 MDFICQ9P1T7 246 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 HLA-DRB4X5D2U9 266 aa14.56□□□□□ -0.08
CLIP3-206ENST00000593074 ACANP16112 2415 aa14.55□□□□□ -0.08
CLIP3-206ENST00000593074 DEFB131AP59861 70 aa14.55□□□□□ -0.08
CLIP3-206ENST00000593074 C2orf91Q6ZV80 131 aa14.55□□□□□ -0.08
CLIP3-206ENST00000593074 C11orf44Q8N8P7 122 aa14.55□□□□□ -0.08
CLIP3-206ENST00000593074 JPT2Q9H910 190 aa14.55□□□□□ -0.08
CLIP3-206ENST00000593074 CD28P10747 220 aa14.54□□□□□ -0.08
CLIP3-206ENST00000593074 RPL32P62910 135 aaKnown RBP14.54□□□□□ -0.08
CLIP3-206ENST00000593074 MPV17L2Q567V2 206 aa14.54□□□□□ -0.08
CLIP3-206ENST00000593074 LINC01006Q8NI28 216 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms