RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MAP1LC3B2A6NCE7 125 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 OXTP01178 125 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 IFNA7P01567 189 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 SFTA3P0C7M3 94 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 GYPEP15421 78 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 ZNF345Q14585 488 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 PRNTQ86SH4 94 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 PCNPQ8WW12 178 aaKnown RBP7.35□□□□□ -1.23
VPS4B-202ENST00000588059 ZNF471Q9BX82 626 aaPredicted RBP7.35□□□□□ -1.23
VPS4B-202ENST00000588059 MAP1LC3BQ9GZQ8 125 aa7.35□□□□□ -1.23
VPS4B-202ENST00000588059 A0A0D9SG52 128 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 A0A1W2PRE2 83 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 HMSDA8MTL9 139 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 GNRH2O43555 120 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 PFDN1O60925 122 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 FLI1Q01543 452 aaPredicted RBP7.34□□□□□ -1.23
VPS4B-202ENST00000588059 ZFP69Q49AA0 526 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 CYB561D1Q8N8Q1 229 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 STOML3Q8TAV4 291 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 ZNF479Q96JC4 524 aa7.34□□□□□ -1.23
VPS4B-202ENST00000588059 PKHD1L1Q86WI1 4243 aa7.34□□□□□ -1.24
VPS4B-202ENST00000588059 TRAV34A0A0B4J273 112 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 IGHV3-38A0A0C4DH36 116 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 IBA57-AS1B1ANH7 110 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 BCL2L11O43521 198 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 ORM1P02763 201 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 FHITP49789 147 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 WFDC2Q14508 124 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 LINC01556Q5JQF7 62 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 TMEM75Q8N9X5 138 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 FAM213BQ8TBF2 198 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 LINC00479Q96M42 142 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 TXNDC17Q9BRA2 123 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 SPXQ9BT56 116 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 Q9HAA7 133 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 SDF2L1Q9HCN8 221 aa7.33□□□□□ -1.24
VPS4B-202ENST00000588059 A0A1B0GV50 99 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 FBLL1A6NHQ2 334 aaKnown RBP7.32□□□□□ -1.24
VPS4B-202ENST00000588059 FAM74A7A6NL05 159 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 PEX7O00628 323 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 GCGP01275 180 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 IGLV2-11P01706 119 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 TYMSP04818 313 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 SEC11BP0C7V7 166 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 PPT1P50897 306 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 ZNF80P51504 273 aaPredicted RBP7.32□□□□□ -1.24
VPS4B-202ENST00000588059 EIF5AP63241 154 aaKnown RBP7.32□□□□□ -1.24
VPS4B-202ENST00000588059 TDRG1Q3Y452 100 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 SMUG1Q53HV7 270 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 SAPCD1Q5SSQ6 148 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 CST9LP1Q5W188 147 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 SCXQ7RTU7 201 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 KCNS1Q96KK3 526 aa7.32□□□□□ -1.24
VPS4B-202ENST00000588059 NKX6-2Q9C056 277 aaPredicted RBP7.32□□□□□ -1.24
VPS4B-202ENST00000588059 IGHV3-16A0A0C4DH30 117 aa7.31□□□□□ -1.24
VPS4B-202ENST00000588059 LOC100131303A0A0U1RQF7 123 aa7.31□□□□□ -1.24
VPS4B-202ENST00000588059 C9JCJ5 164 aa7.31□□□□□ -1.24
VPS4B-202ENST00000588059 TIRAPP58753 221 aa7.31□□□□□ -1.24
VPS4B-202ENST00000588059 TMUB2Q71RG4 321 aa7.31□□□□□ -1.24
VPS4B-202ENST00000588059 SFT2D1Q8WV19 159 aa7.31□□□□□ -1.24
VPS4B-202ENST00000588059 UMAD1C9J7I0 102 aa7.3□□□□□ -1.24
VPS4B-202ENST00000588059 M0R2P5 195 aa7.3□□□□□ -1.24
VPS4B-202ENST00000588059 PFN1P07737 140 aaKnown RBP7.3□□□□□ -1.24
VPS4B-202ENST00000588059 TPT1P13693 172 aaKnown RBP7.3□□□□□ -1.24
VPS4B-202ENST00000588059 RASL10AQ92737 203 aa7.3□□□□□ -1.24
VPS4B-202ENST00000588059 HIST1H2BAQ96A08 127 aa7.3□□□□□ -1.24
VPS4B-202ENST00000588059 ARL2-SNX15V9GYD0 113 aa7.3□□□□□ -1.24
VPS4B-202ENST00000588059 PAGE4O60829 102 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 UBE2G1P62253 170 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 LINC01620Q4KN68 170 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 DPPA3Q6W0C5 159 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 SH2D6Q7Z4S9 175 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 Q86TA4 180 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 OR4C5Q8NGB2 326 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 C11orf21Q9P2W6 132 aa7.29□□□□□ -1.24
VPS4B-202ENST00000588059 hCG_2014768A0A024R1R8 64 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 TRAV4A0A0B4J268 109 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 LECT2O14960 151 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 IGHV3-30P01768 117 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 IGHV3-33P01772 117 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 H2AFB1P0C5Y9 115 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 IGHV3-30-3P0DP02 117 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 IGHV3-30-5P0DP03 117 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 AKR1C3P42330 323 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 LAGE3Q14657 143 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 Q6ZNX1 250 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 TCTE3Q8IZS6 198 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 NHLRC2Q8NBF2 726 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 MBD3L1Q8WWY6 194 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 FMC1Q96HJ9 113 aa7.28□□□□□ -1.24
VPS4B-202ENST00000588059 RNF213Q63HN8 5207 aa7.27□□□□□ -1.24
VPS4B-202ENST00000588059 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.27□□□□□ -1.25
VPS4B-202ENST00000588059 TRAV8-6A0A0B4J262 113 aa7.27□□□□□ -1.25
VPS4B-202ENST00000588059 FABP5P3A8MUU1 101 aa7.27□□□□□ -1.25
VPS4B-202ENST00000588059 S100A4P26447 101 aaKnown RBP7.27□□□□□ -1.25
VPS4B-202ENST00000588059 LGALSLQ3ZCW2 172 aaPredicted RBP7.27□□□□□ -1.25
VPS4B-202ENST00000588059 ZNF876PQ49A33 203 aa7.27□□□□□ -1.25
VPS4B-202ENST00000588059 CHAC1Q9BUX1 264 aa7.27□□□□□ -1.25
VPS4B-202ENST00000588059 TM2D2Q9BX73 214 aa7.27□□□□□ -1.25
VPS4B-202ENST00000588059 ASIPP42127 132 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms