RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 CTDSP1Q9GZU7 261 aa13.12□□□□□ -0.31
RFFL-211ENST00000584541 NBEAL2Q6ZNJ1 2754 aa13.12□□□□□ -0.31
RFFL-211ENST00000584541 C7orf77A4D0Y5 90 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 F2Z2F3 143 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 SNAI2O43623 268 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 IGLC6P0CF74 106 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 LGALS9BQ3B8N2 356 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 SYT8Q8NBV8 401 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 DKK2Q9UBU2 259 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 TGP01266 2768 aa13.11□□□□□ -0.31
RFFL-211ENST00000584541 TRGV1A0A0A0MS02 117 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 CXorf65A6NEN9 183 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 SPINK4O60575 86 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 ZFP82Q8N141 532 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 BORCS7Q96B45 105 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 SSBP4Q9BWG4 385 aaPredicted RBP13.1□□□□□ -0.31
RFFL-211ENST00000584541 SCRT2Q9NQ03 307 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 RPS10P5Q9NQ39 176 aa13.1□□□□□ -0.31
RFFL-211ENST00000584541 CACNG7P62955 275 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 ZNF876PQ49A33 203 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 SPANXN1Q5VSR9 72 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 LYZL1Q6UWQ5 148 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 GTSF1Q8WW33 167 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 PTH2Q96A98 100 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 MRPL16Q9NX20 251 aaKnown RBP13.09□□□□□ -0.31
RFFL-211ENST00000584541 NAT8BQ9UHF3 227 aa13.09□□□□□ -0.31
RFFL-211ENST00000584541 MUC4Q99102 2169 aa13.08□□□□□ -0.31
RFFL-211ENST00000584541 A0A087WWC5 75 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 SMIM27A0A1W2PRY6 76 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 HIGD1CA8MV81 97 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 M0R381 172 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 CTRLP40313 264 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 FOXA3P55318 350 aaPredicted RBP13.08□□□□□ -0.32
RFFL-211ENST00000584541 DAD1P61803 113 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 Q6ZTI0 123 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 C11orf45Q8TAV5 145 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 PGLYRP4Q96LB8 373 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 NDUFAF3Q9BU61 184 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 CELA1Q9UNI1 258 aa13.08□□□□□ -0.32
RFFL-211ENST00000584541 GAGE12BA1L429 117 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 GAGE7O76087 117 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 GAGE12FP0CL80 117 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 GAGE12GP0CL81 117 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 GAGE12IP0CL82 117 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 DEFB130BP0DP73 79 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 DEFB130AP0DP74 79 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 OR10AG1Q8NH19 301 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 RASL10AQ92737 203 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 TMEM242Q9NWH2 141 aa13.07□□□□□ -0.32
RFFL-211ENST00000584541 TRGV2A0A075B6R0 118 aa13.06□□□□□ -0.32
RFFL-211ENST00000584541 PIK3CD-AS1Q5SR53 167 aa13.06□□□□□ -0.32
RFFL-211ENST00000584541 WDR73Q6P4I2 378 aa13.06□□□□□ -0.32
RFFL-211ENST00000584541 IMMP2LQ96T52 175 aa13.06□□□□□ -0.32
RFFL-211ENST00000584541 MUC21A0A0G2JKD1 596 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 MUC21A0A140T8X8 626 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 SSTP61278 116 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 DMRTA1Q5VZB9 504 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 KCNIP4Q6PIL6 250 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 LINC00612Q8N6U2 182 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 NUP35Q8NFH5 326 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 DNAH9Q9NYC9 4486 aa13.05□□□□□ -0.32
RFFL-211ENST00000584541 A0A1B0GUT8 65 aa13.04□□□□□ -0.32
RFFL-211ENST00000584541 S100PP25815 95 aa13.04□□□□□ -0.32
RFFL-211ENST00000584541 EDA2RQ9HAV5 297 aa13.04□□□□□ -0.32
RFFL-211ENST00000584541 IGHV4-4A0A075B6R2 117 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 A8MWV9 139 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 ATP6V1G1O75348 118 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 NXPH4O95158 308 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 S100A1P23297 94 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 RIGQ13278 110 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 TWIST1Q15672 202 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 CNFNQ9BYD5 112 aa13.03□□□□□ -0.32
RFFL-211ENST00000584541 HUWE1Q7Z6Z7 4374 aaKnown RBP13.03□□□□□ -0.32
RFFL-211ENST00000584541 TENM3Q9P273 2699 aa13.02□□□□□ -0.32
RFFL-211ENST00000584541 TRGC1P0CF51 173 aa13.02□□□□□ -0.33
RFFL-211ENST00000584541 NTF3P20783 257 aa13.02□□□□□ -0.33
RFFL-211ENST00000584541 C12orf74Q32Q52 190 aa13.02□□□□□ -0.33
RFFL-211ENST00000584541 OR4C5Q8NGB2 326 aa13.02□□□□□ -0.33
RFFL-211ENST00000584541 C18orf15Q96N68 181 aa13.02□□□□□ -0.33
RFFL-211ENST00000584541 TRAV4A0A0B4J268 109 aa13.01□□□□□ -0.33
RFFL-211ENST00000584541 FAM3BP58499 235 aaPredicted RBP13.01□□□□□ -0.33
RFFL-211ENST00000584541 NANOS2P60321 138 aaKnown RBP13.01□□□□□ -0.33
RFFL-211ENST00000584541 SMIM15Q7Z3B0 74 aa13.01□□□□□ -0.33
RFFL-211ENST00000584541 AP1S3Q96PC3 154 aa13.01□□□□□ -0.33
RFFL-211ENST00000584541 RS1O15537 224 aa13□□□□□ -0.33
RFFL-211ENST00000584541 CIDEAO60543 219 aa13□□□□□ -0.33
RFFL-211ENST00000584541 ATP5G1P05496 136 aa13□□□□□ -0.33
RFFL-211ENST00000584541 SMIM17P0DL12 118 aa13□□□□□ -0.33
RFFL-211ENST00000584541 ATRAIDQ6UW56 229 aa13□□□□□ -0.33
RFFL-211ENST00000584541 BTF3L4Q96K17 158 aa13□□□□□ -0.33
RFFL-211ENST00000584541 COL7A1Q02388 2944 aa13□□□□□ -0.33
RFFL-211ENST00000584541 TRAV9-1A0A075B6T8 112 aa12.99□□□□□ -0.33
RFFL-211ENST00000584541 A0A1B0GW15 77 aa12.99□□□□□ -0.33
RFFL-211ENST00000584541 CFAP126Q5VTH2 177 aa12.99□□□□□ -0.33
RFFL-211ENST00000584541 MSRB1Q9NZV6 116 aa12.99□□□□□ -0.33
RFFL-211ENST00000584541 RHODO00212 210 aa12.98□□□□□ -0.33
RFFL-211ENST00000584541 IGHV3-53P01767 116 aa12.98□□□□□ -0.33
RFFL-211ENST00000584541 S100A8P05109 93 aa12.98□□□□□ -0.33
RFFL-211ENST00000584541 MRPL54Q6P161 138 aaKnown RBP12.98□□□□□ -0.33
RFFL-211ENST00000584541 Q6ZTC4 211 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms