RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 DIRC1Q969H9 104 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 FAM3DQ96BQ1 224 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 ABHD14BQ96IU4 210 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 TRGV9Q99603 122 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 MGST2Q99735 147 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 DEC1Q9P2X7 70 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 KDM6BO15054 1643 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 PHF3Q92576 2039 aaKnown RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 DOCK4Q8N1I0 1966 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 NEXMIFQ5QGS0 1516 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 TRPM7Q96QT4 1865 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 MYO5AQ9Y4I1 1855 aaKnown RBP2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 PTPRMP28827 1452 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 PXDNQ92626 1479 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 PATJQ8NI35 1801 aa2.01□□□□□ -2.09
SMCHD1-202ENST00000577300 RGPD2P0DJD1 1756 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 UBR2Q8IWV8 1755 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 FMN2Q9NZ56 1722 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 USP32Q8NFA0 1604 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 CICQ96RK0 1608 aaPredicted RBP2□□□□□ -2.09
SMCHD1-202ENST00000577300 MAP3K4Q9Y6R4 1608 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 MYLKQ15746 1914 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 IGLV11-55A0A075B6I3 123 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 IGHV1-69DA0A0B4J2H0 117 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 C19orf71A6NCJ1 209 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 LTAP01374 205 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 PRH1P02810 166 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 NCBP2P52298 156 aaKnown RBP eCLIP2□□□□□ -2.09
SMCHD1-202ENST00000577300 SYNJ2BPP57105 145 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 UBE2D3P61077 147 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 UBE2D2P62837 147 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 RBM3P98179 157 aaKnown RBP2□□□□□ -2.09
SMCHD1-202ENST00000577300 RPL18Q07020 188 aaKnown RBP2□□□□□ -2.09
SMCHD1-202ENST00000577300 FBXL19-AS1Q494R0 122 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 LINC01554Q52M75 96 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 TMEM170BQ5T4T1 132 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 SDIM1Q6ZPB5 146 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 C7orf65Q6ZTY9 151 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 LINC00173Q6ZV60 143 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 LINC00643Q86TS7 51 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 MDP1Q86V88 176 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 SLC50A1Q9BRV3 221 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 TMEM243Q9BU79 118 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 PROK2Q9HC23 129 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 LY96Q9Y6Y9 160 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 ADGRB2O60241 1585 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 CEP170Q5SW79 1584 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 DLC1Q96QB1 1528 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 GPATCH8Q9UKJ3 1502 aaKnown RBP2□□□□□ -2.09
SMCHD1-202ENST00000577300 TSC2P49815 1807 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 COL1A1P02452 1464 aaPredicted RBP2□□□□□ -2.09
SMCHD1-202ENST00000577300 FANCMQ8IYD8 2048 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 WDR90Q96KV7 1748 aa2□□□□□ -2.09
SMCHD1-202ENST00000577300 IGLV3-9A0A075B6K5 115 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 TRAV1-2A0A0B4J238 106 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 IGHV1OR15-9A0A0B4J2B8 117 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 IGHV1-24A0A0C4DH33 117 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 TCRBV4S1A1TA0A5B7 111 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 NPYP01303 97 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 ACYP1P07311 99 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 CCL4P13236 92 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 GCHFRP30047 84 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 PCBD1P61457 104 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 SSBP1Q04837 148 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 KISS1Q15726 138 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 C12orf73Q69YU5 71 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 GUSBP11Q6P575 273 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 PATE2Q6UY27 113 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 C6orf201Q7Z4U5 140 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 FAM223AQ8IWN6 122 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 SLC25A29Q8N8R3 303 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 ITLN2Q8WWU7 325 aaPredicted RBP1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 SND1-IT1Q9HBX3 110 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 NHP2Q9NX24 153 aaKnown RBP1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 C5P01031 1676 aa1.99□□□□□ -2.09
SMCHD1-202ENST00000577300 MED1Q15648 1581 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 LAMB1P07942 1786 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 ZFC3H1O60293 1989 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 TJP1Q07157 1748 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 IGHV3OR15-7A0A075B7D8 119 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 TMSB15BA0A087X1C1 80 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 TRBV7-1A0A0A6YYK4 115 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 MYMXA0A1B0GTQ4 84 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 FAM223BA6NKX1 122 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 C9JCJ5 164 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 E7EQL1 145 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 H7BZZ5 65 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 IGLV2-8P01709 118 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 IGKV1-16P04430 117 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 PRM2P04554 102 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 CXCL8P10145 99 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 FUSP35637 526 aaKnown RBP eCLIP1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 XCL1P47992 114 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 ATP5EP56381 51 aaPredicted RBP1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 UBE2BP63146 152 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 RPS21P63220 83 aaKnown RBP1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 ADIGQ0VDE8 80 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 Q1T7F1 81 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 FAM229BQ4G0N7 80 aa1.98□□□□□ -2.09
SMCHD1-202ENST00000577300 PSMG4Q5JS54 123 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms