RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 LINC01556Q5JQF7 62 aa9.24□□□□□ -0.93
CCDC40-216ENST00000576241 C9orf85Q96MD7 179 aa9.24□□□□□ -0.93
CCDC40-216ENST00000576241 HMCN2Q8NDA2 5059 aa9.24□□□□□ -0.93
CCDC40-216ENST00000576241 FXYD6-FXYD2A0A087WZ82 144 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 A0A1W2PRE2 83 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 IFNA7P01567 189 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 MGST1P10620 155 aaKnown RBP9.23□□□□□ -0.93
CCDC40-216ENST00000576241 S100A4P26447 101 aaKnown RBP9.23□□□□□ -0.93
CCDC40-216ENST00000576241 OR10J3Q5JRS4 329 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 ZNF506Q5JVG8 444 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 DPPA3Q6W0C5 159 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 PTH2Q96A98 100 aa9.23□□□□□ -0.93
CCDC40-216ENST00000576241 PGPEP1LA6NFU8 196 aa9.22□□□□□ -0.93
CCDC40-216ENST00000576241 J3QL48 77 aa9.22□□□□□ -0.93
CCDC40-216ENST00000576241 Q5BKY6 102 aa9.22□□□□□ -0.93
CCDC40-216ENST00000576241 Q5VSD8 79 aa9.22□□□□□ -0.93
CCDC40-216ENST00000576241 RPL7L1Q6DKI1 246 aaKnown RBP9.22□□□□□ -0.93
CCDC40-216ENST00000576241 IBA57-AS1B1ANH7 110 aa9.21□□□□□ -0.94
CCDC40-216ENST00000576241 RNASE3P12724 160 aaKnown RBP9.21□□□□□ -0.94
CCDC40-216ENST00000576241 LELP1Q5T871 98 aa9.21□□□□□ -0.94
CCDC40-216ENST00000576241 ATP6V0E2Q8NHE4 81 aa9.21□□□□□ -0.94
CCDC40-216ENST00000576241 GTSF1LQ9H1H1 148 aa9.21□□□□□ -0.94
CCDC40-216ENST00000576241 Q9HAA7 133 aa9.21□□□□□ -0.94
CCDC40-216ENST00000576241 VPS13BQ7Z7G8 4022 aa9.21□□□□□ -0.94
CCDC40-216ENST00000576241 TRAV34A0A0B4J273 112 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 CTXND1A0A1B0GTU2 59 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 RNF222A6NCQ9 220 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 FABP5P3A8MUU1 101 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 A8MWV9 139 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 GCSHP23434 173 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 ASIPP42127 132 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 KRTAP10-1P60331 282 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 UBE2G2P60604 165 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 AKR1C8PQ5T2L2 129 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 LINC00479Q96M42 142 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 ARL2-SNX15V9GYD0 113 aa9.2□□□□□ -0.94
CCDC40-216ENST00000576241 IGLV5-52A0A0A0MRZ9 124 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 PEX7O00628 323 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 IGHV3-30P01768 117 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 IGHV3-33P01772 117 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 IGHV3-30-3P0DP02 117 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 IGHV3-30-5P0DP03 117 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 XGP55808 180 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 ZNF726P1Q15940 193 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 LGALSLQ3ZCW2 172 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-216ENST00000576241 PIK3CD-AS1Q5SR53 167 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 ZFP2Q6ZN57 461 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 Q86TA4 180 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 OR2T35Q8NGX2 323 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 FRZBQ92765 325 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 NKX6-2Q9C056 277 aaPredicted RBP9.19□□□□□ -0.94
CCDC40-216ENST00000576241 PARLQ9H300 379 aa9.19□□□□□ -0.94
CCDC40-216ENST00000576241 IGKV3D-20A0A0C4DH25 116 aa9.18□□□□□ -0.94
CCDC40-216ENST00000576241 B4DEV8 164 aa9.18□□□□□ -0.94
CCDC40-216ENST00000576241 SYT8Q8NBV8 401 aa9.18□□□□□ -0.94
CCDC40-216ENST00000576241 NTN5Q8WTR8 489 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-216ENST00000576241 HIST1H2BAQ96A08 127 aa9.18□□□□□ -0.94
CCDC40-216ENST00000576241 LRCOL1A6NCL2 159 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 GAGE12JA6NER3 117 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 FAM74A7A6NL05 159 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 FGF8P55075 233 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-216ENST00000576241 GAGE1Q13065 139 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 GAGE4Q13068 117 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 GAGE5Q13069 117 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 LAGE3Q14657 143 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 GAGE13Q4V321 117 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 IL36BQ9NZH7 164 aa9.17□□□□□ -0.94
CCDC40-216ENST00000576241 MAP1LC3B2A6NCE7 125 aa9.16□□□□□ -0.94
CCDC40-216ENST00000576241 UBE2G1P62253 170 aa9.16□□□□□ -0.94
CCDC40-216ENST00000576241 Q6ZSN1 163 aa9.16□□□□□ -0.94
CCDC40-216ENST00000576241 TM2D2Q9BX73 214 aa9.16□□□□□ -0.94
CCDC40-216ENST00000576241 MAP1LC3BQ9GZQ8 125 aa9.16□□□□□ -0.94
CCDC40-216ENST00000576241 ZFP30Q9Y2G7 519 aa9.16□□□□□ -0.94
CCDC40-216ENST00000576241 A0A087WWC5 75 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 H3BVH4 76 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 M0R036 132 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 RHODO00212 210 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 FAM162BQ5T6X4 162 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 Q8N814 137 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 STOML3Q8TAV4 291 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 ZC2HC1AQ96GY0 325 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 FMC1Q96HJ9 113 aa9.15□□□□□ -0.94
CCDC40-216ENST00000576241 KRBOX1C9JBD0 128 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 ARPC5O15511 151 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 SH2D1AO60880 128 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 ARMS2P0C7Q2 107 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 TOR2AQ5JU69 321 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 DMRTA1Q5VZB9 504 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 OR11H4Q8NGC9 324 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 TCEAL7Q9BRU2 100 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 TMEM70Q9BUB7 260 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 JPT2Q9H910 190 aa9.14□□□□□ -0.95
CCDC40-216ENST00000576241 TRAV8-3A0A0A6YYJ7 113 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 GRIFINA4D1Z8 144 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 FAM229AH3BQW9 127 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 LINC00694P0DN24 101 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 DNLZQ5SXM8 178 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 FAM74A4Q5TZK3 123 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 CST9LP1Q5W188 147 aa9.13□□□□□ -0.95
CCDC40-216ENST00000576241 COX8CQ7Z4L0 72 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms