RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 Q6ZR54 194 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 OR4C5Q8NGB2 326 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 FAM213BQ8TBF2 198 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 RASL10AQ92737 203 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 C8orf49Q96NF6 230 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 TCEAL7Q9BRU2 100 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 ARL2-SNX15V9GYD0 113 aa5.63□□□□□ -1.51
VPS53-214ENST00000572607 A0A096LPF7 62 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 TRAV4A0A0B4J268 109 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 FAM74A7A6NL05 159 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 C9JCJ5 164 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 ORM1P02763 201 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 S100A4P26447 101 aaKnown RBP5.62□□□□□ -1.51
VPS53-214ENST00000572607 SRIP30626 198 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 AKR1C3P42330 323 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 CRYBA4P53673 196 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 KRTAP10-2P60368 255 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 MRPL23Q16540 153 aaKnown RBP5.62□□□□□ -1.51
VPS53-214ENST00000572607 Q86TA4 180 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 OR11H4Q8NGC9 324 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 SFT2D1Q8WV19 159 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 FMC1Q96HJ9 113 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 VSIG2Q96IQ7 327 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 UPK3BQ9BT76 320 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 Q9H8V8 135 aa5.62□□□□□ -1.51
VPS53-214ENST00000572607 MRPS16Q9Y3D3 137 aaKnown RBP5.62□□□□□ -1.51
VPS53-214ENST00000572607 TRAV34A0A0B4J273 112 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 A0A1B0GV50 99 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 FABP5P3A8MUU1 101 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 TEX46H3BTG2 121 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 RTL8CO15255 209 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 CIDEAO60543 219 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 IGLV2-11P01706 119 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 SFTA3P0C7M3 94 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 FHITP49789 147 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 ZNF80P51504 273 aaPredicted RBP5.61□□□□□ -1.51
VPS53-214ENST00000572607 FHL2Q14192 279 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 ESRGQ1W209 222 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 ZNF876PQ49A33 203 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 TMUB2Q71RG4 321 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 NEGR1Q7Z3B1 354 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 C6orf223Q8N319 242 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 ZNF479Q96JC4 524 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 LINC00479Q96M42 142 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 ZFP30Q9Y2G7 519 aa5.61□□□□□ -1.51
VPS53-214ENST00000572607 A0A1B0GVY2 172 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 A0A1W2PPQ1 181 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 PAGE4O60829 102 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 S100A9P06702 114 aaKnown RBP5.6□□□□□ -1.51
VPS53-214ENST00000572607 GYPEP15421 78 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 ASIPP42127 132 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 LGALSLQ3ZCW2 172 aaPredicted RBP5.6□□□□□ -1.51
VPS53-214ENST00000572607 TCTE3Q8IZS6 198 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 MBD3L1Q8WWY6 194 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 TXNDC17Q9BRA2 123 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 LRP1BQ9NZR2 4599 aa5.6□□□□□ -1.51
VPS53-214ENST00000572607 HERC1Q15751 4861 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 TRBV6-1A0A0K0K1D8 114 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 B4DEV8 164 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 K7EQD1 137 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 SIVA1O15304 175 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 NXPH4O95158 308 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 RAB5CP51148 216 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 FAM162BQ5T6X4 162 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 SH2D6Q7Z4S9 175 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 NHLRC2Q8NBF2 726 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 SYT8Q8NBV8 401 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 C9orf85Q96MD7 179 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 PRADC1Q9BSG0 188 aa5.59□□□□□ -1.51
VPS53-214ENST00000572607 APOBP04114 4563 aaKnown RBP5.58□□□□□ -1.52
VPS53-214ENST00000572607 IGKV3D-20A0A0C4DH25 116 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 A8MWV9 139 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 RS1O15537 224 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 BTF3P20290 206 aaKnown RBP5.58□□□□□ -1.52
VPS53-214ENST00000572607 RHOHQ15669 191 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 LYPD5Q6UWN5 251 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 AKAP14Q86UN6 197 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 PTH2Q96A98 100 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 ZC2HC1AQ96GY0 325 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 MANBALQ9NQG1 85 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 C11orf21Q9P2W6 132 aa5.58□□□□□ -1.52
VPS53-214ENST00000572607 TRAV9-2A0A087WT02 112 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 TRBV6-4A0A1B0GX49 114 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 M0R036 132 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 SH2D1AO60880 128 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 LTAP01374 205 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 IFNA1P01562 189 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 C1QBP02746 253 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 MGST1P10620 155 aaKnown RBP5.57□□□□□ -1.52
VPS53-214ENST00000572607 RNASE3P12724 160 aaKnown RBP5.57□□□□□ -1.52
VPS53-214ENST00000572607 GATA1P15976 413 aaPredicted RBP5.57□□□□□ -1.52
VPS53-214ENST00000572607 ZNF506Q5JVG8 444 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 CFAP126Q5VTH2 177 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 Q6ZNX1 250 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 COX8CQ7Z4L0 72 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 SLC51BQ86UW2 128 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 GNG13Q9P2W3 67 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 PHLDA3Q9Y5J5 127 aa5.57□□□□□ -1.52
VPS53-214ENST00000572607 hCG_2014768A0A024R1R8 64 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 TMSB15BA0A087X1C1 80 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms