RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 NDUFA3O95167 84 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 IGKV1D-16P01601 117 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 ARMS2P0C7Q2 107 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 LAGE3Q14657 143 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 SS18Q15532 418 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 ECSCRQ19T08 205 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 PIGYQ3MUY2 71 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 Q6ZVQ6 151 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 FAM223AQ8IWN6 122 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 C6orf223Q8N319 242 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 FAM216BQ8N7L0 139 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 SPATA3Q8NHX4 192 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 SPTSSAQ969W0 71 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 FAM167A-AS1Q96KT0 104 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 KRTAP2-2Q9BYT5 123 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 C11orf68Q9H3H3 251 aaKnown RBP3.12□□□□□ -1.91
VPS39-212ENST00000570023 ICOSQ9Y6W8 199 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 DOCK3Q8IZD9 2030 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 TNS1Q9HBL0 1735 aaKnown RBP3.11□□□□□ -1.91
VPS39-212ENST00000570023 IGLV5-52A0A0A0MRZ9 124 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 SDHAF1A6NFY7 115 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 ERC2-IT1O76042 136 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 UBE2BP63146 152 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 ESRGQ1W209 222 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 LINC00322Q6ZN03 302 aaPredicted RBP3.11□□□□□ -1.91
VPS39-212ENST00000570023 C16orf47Q6ZP98 133 aaPredicted RBP3.11□□□□□ -1.91
VPS39-212ENST00000570023 C20orf197Q8N268 126 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 FGFBP3Q8TAT2 258 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 FXYD5Q96DB9 178 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 PROK2Q9HC23 129 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 LINC00474Q9P2X8 69 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 LINC00588Q9Y4M8 146 aa3.11□□□□□ -1.91
VPS39-212ENST00000570023 COL4A2P08572 1712 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 KIAA1549LQ6ZVL6 1849 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 IGLV2-18A0A075B6J9 118 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 IGKV1-12A0A0C4DH73 117 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 C11orf86A6NJI1 115 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 J3QT63 122 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 IGKV1D-12P01611 117 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 IGHV3-13P01766 116 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 ZNF876PQ49A33 203 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 UNQ9165/PRO28630Q6UXU0 137 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 LCA10Q71F78 164 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 COX8CQ7Z4L0 72 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 VMO1Q7Z5L0 202 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 Q86TA4 180 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 Q8IYB0 196 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 ZNF524Q96C55 264 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 SCGB3A1Q96QR1 104 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 OVOL2Q9BRP0 275 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 CNFNQ9BYD5 112 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 PTPRDP23468 1912 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 LTBP1Q14766 1721 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 MDC1Q14676 2089 aaKnown RBP3.1□□□□□ -1.91
VPS39-212ENST00000570023 MED12LQ86YW9 2145 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 COL18A1P39060 1754 aa3.1□□□□□ -1.91
VPS39-212ENST00000570023 PTPRSQ13332 1948 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 DOCK9Q9BZ29 2069 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 IGKV1-27A0A075B6S5 117 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 IGHV3OR16-10A0A075B7F0 116 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 IGHV1OR21-1A0A087WYE8 117 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 IGKV1-8A0A0C4DH67 115 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 A0A1B0GUV1 79 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 C4orf51C9J302 202 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 ZNF73O43830 326 aaPredicted RBP3.09□□□□□ -1.91
VPS39-212ENST00000570023 DNAL4O96015 105 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 ZNF80P51504 273 aaPredicted RBP3.09□□□□□ -1.91
VPS39-212ENST00000570023 BLCAPP62952 87 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 CXCL6P80162 114 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 KIAA2026Q5HYC2 2103 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 C10orf113Q5VZT2 155 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 ATP11AUNQ6ZP68 121 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 LYPD1Q8N2G4 141 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.09□□□□□ -1.91
VPS39-212ENST00000570023 ZNF491Q8N8L2 437 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 TOMM6Q96B49 74 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 IMMP1LQ96LU5 166 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 Q9H8V8 135 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 CTSZQ9UBR2 303 aa3.09□□□□□ -1.91
VPS39-212ENST00000570023 EXPH5Q8NEV8 1989 aa3.09□□□□□ -1.92
VPS39-212ENST00000570023 IGHV1OR15-9A0A0B4J2B8 117 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 IGHV1-69DA0A0B4J2H0 117 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 C17orf98A8MV24 154 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 E7EQL1 145 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 TMEM256-PLSCR3K7ERE1 68 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 COX7A2LO14548 114 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 LEPROTO15243 131 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 SH2D1AO60880 128 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 IGHV4-34P06331 123 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 C2orf83Q53S99 150 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 HIST2H2BCQ6DN03 193 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 HIST2H2BDQ6DRA6 164 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 LYZL1Q6UWQ5 148 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 VN1R4Q7Z5H5 301 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 MUSTN1Q8IVN3 82 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 OPRPNQ99935 248 aaPredicted RBP3.08□□□□□ -1.92
VPS39-212ENST00000570023 DCTN5Q9BTE1 182 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 ESM1Q9NQ30 184 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 TMEM14CQ9P0S9 112 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 KIAA1549Q9HCM3 1950 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms