RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 K7EP13 123 aa12.84□□□□□ -0.35
CLN3-227ENST00000567495 RS1O15537 224 aa12.84□□□□□ -0.35
CLN3-227ENST00000567495 RNASE3P12724 160 aaKnown RBP12.84□□□□□ -0.35
CLN3-227ENST00000567495 AKR1C3P42330 323 aa12.84□□□□□ -0.35
CLN3-227ENST00000567495 RAB5CP51148 216 aa12.84□□□□□ -0.35
CLN3-227ENST00000567495 CFAP126Q5VTH2 177 aa12.84□□□□□ -0.35
CLN3-227ENST00000567495 B4DEV8 164 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 LTAP01374 205 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 ZNF506Q5JVG8 444 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 ZC2HC1AQ96GY0 325 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 PRADC1Q9BSG0 188 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 KRTAP1-5Q9BYS1 174 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 IL36BQ9NZH7 164 aa12.83□□□□□ -0.36
CLN3-227ENST00000567495 TRAV9-2A0A087WT02 112 aa12.82□□□□□ -0.36
CLN3-227ENST00000567495 TRBV6-4A0A1B0GX49 114 aa12.82□□□□□ -0.36
CLN3-227ENST00000567495 A8MWV9 139 aa12.82□□□□□ -0.36
CLN3-227ENST00000567495 TIRAPP58753 221 aa12.82□□□□□ -0.36
CLN3-227ENST00000567495 TNP2Q05952 138 aa12.82□□□□□ -0.36
CLN3-227ENST00000567495 DNLZQ5SXM8 178 aa12.82□□□□□ -0.36
CLN3-227ENST00000567495 TRAV1-1A0A0B4J248 108 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 PGPEP1LA6NFU8 196 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 TEX46H3BTG2 121 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 SH2D1AO60880 128 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 MGST1P10620 155 aaKnown RBP12.81□□□□□ -0.36
CLN3-227ENST00000567495 CRIP1P50238 77 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 RHOHQ15669 191 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 ZNF674Q2M3X9 581 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 ZFP2Q6ZN57 461 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 BOLA1Q9Y3E2 137 aa12.81□□□□□ -0.36
CLN3-227ENST00000567495 KRBOX1C9JBD0 128 aa12.8□□□□□ -0.36
CLN3-227ENST00000567495 SLC25A29Q8N8R3 303 aa12.8□□□□□ -0.36
CLN3-227ENST00000567495 NHLRC2Q8NBF2 726 aa12.8□□□□□ -0.36
CLN3-227ENST00000567495 A0A1B0GV50 99 aa12.79□□□□□ -0.36
CLN3-227ENST00000567495 MED14OSP0DP75 135 aa12.79□□□□□ -0.36
CLN3-227ENST00000567495 Q6ZNX1 250 aa12.79□□□□□ -0.36
CLN3-227ENST00000567495 SYT8Q8NBV8 401 aa12.79□□□□□ -0.36
CLN3-227ENST00000567495 MANBALQ9NQG1 85 aa12.79□□□□□ -0.36
CLN3-227ENST00000567495 LY96Q9Y6Y9 160 aa12.79□□□□□ -0.36
CLN3-227ENST00000567495 M0R036 132 aa12.78□□□□□ -0.36
CLN3-227ENST00000567495 C1QBP02746 253 aa12.78□□□□□ -0.36
CLN3-227ENST00000567495 LINC01559Q495D7 138 aa12.78□□□□□ -0.36
CLN3-227ENST00000567495 SCO2A0A1W2PP80 73 aa12.77□□□□□ -0.37
CLN3-227ENST00000567495 ARMS2P0C7Q2 107 aa12.77□□□□□ -0.37
CLN3-227ENST00000567495 EVI2AP22794 236 aa12.77□□□□□ -0.37
CLN3-227ENST00000567495 NFE4Q86UQ8 179 aa12.77□□□□□ -0.37
CLN3-227ENST00000567495 BAGE2Q86Y30 109 aa12.77□□□□□ -0.37
CLN3-227ENST00000567495 PKHD1P08F94 4074 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 IGHV3-73A0A0B4J1V6 119 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 LOC100131303A0A0U1RQF7 123 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 H3BVH4 76 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 RHODO00212 210 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 DNAH10OSP0CZ25 163 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 LINC00315P59091 139 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 SLC51BQ86UW2 128 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 PARLQ9H300 379 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 PHLDA3Q9Y5J5 127 aa12.76□□□□□ -0.37
CLN3-227ENST00000567495 SULT1A2P50226 295 aa12.75□□□□□ -0.37
CLN3-227ENST00000567495 DMRTA1Q5VZB9 504 aa12.75□□□□□ -0.37
CLN3-227ENST00000567495 C10orf126Q8N4M7 172 aa12.75□□□□□ -0.37
CLN3-227ENST00000567495 MLST8Q9BVC4 326 aa12.75□□□□□ -0.37
CLN3-227ENST00000567495 SCRT2Q9NQ03 307 aa12.75□□□□□ -0.37
CLN3-227ENST00000567495 GNG13Q9P2W3 67 aa12.75□□□□□ -0.37
CLN3-227ENST00000567495 TRAV8-6A0A0B4J262 113 aa12.74□□□□□ -0.37
CLN3-227ENST00000567495 GRIFINA4D1Z8 144 aa12.74□□□□□ -0.37
CLN3-227ENST00000567495 DNAH11Q96DT5 4516 aa12.74□□□□□ -0.37
CLN3-227ENST00000567495 CXCL1P09341 107 aa12.73□□□□□ -0.37
CLN3-227ENST00000567495 CCL20P78556 96 aa12.73□□□□□ -0.37
CLN3-227ENST00000567495 AKAP14Q86UN6 197 aa12.73□□□□□ -0.37
CLN3-227ENST00000567495 WFDC10BQ8IUB3 73 aa12.73□□□□□ -0.37
CLN3-227ENST00000567495 ZFP82Q8N141 532 aa12.73□□□□□ -0.37
CLN3-227ENST00000567495 C11orf52Q96A22 123 aa12.73□□□□□ -0.37
CLN3-227ENST00000567495 IGHV3-38A0A0C4DH36 116 aa12.72□□□□□ -0.37
CLN3-227ENST00000567495 C16orf90A8MZG2 172 aa12.72□□□□□ -0.37
CLN3-227ENST00000567495 UFSP1Q6NVU6 142 aa12.72□□□□□ -0.37
CLN3-227ENST00000567495 Q6ZRN7 208 aaPredicted RBP12.72□□□□□ -0.37
CLN3-227ENST00000567495 ATP6V0E2Q8NHE4 81 aa12.72□□□□□ -0.37
CLN3-227ENST00000567495 GTSF1LQ9H1H1 148 aa12.72□□□□□ -0.37
CLN3-227ENST00000567495 PKD1P98161 4303 aa12.72□□□□□ -0.37
CLN3-227ENST00000567495 TMSB15BA0A087X1C1 80 aa12.71□□□□□ -0.37
CLN3-227ENST00000567495 IFNA1P01562 189 aa12.71□□□□□ -0.37
CLN3-227ENST00000567495 TAGLN2P37802 199 aaKnown RBP12.71□□□□□ -0.37
CLN3-227ENST00000567495 RPL35P42766 123 aaKnown RBP12.71□□□□□ -0.37
CLN3-227ENST00000567495 ZNF575Q86XF7 245 aa12.71□□□□□ -0.37
CLN3-227ENST00000567495 MSRB1Q9NZV6 116 aa12.71□□□□□ -0.37
CLN3-227ENST00000567495 HERC2O95714 4834 aa12.71□□□□□ -0.38
CLN3-227ENST00000567495 PDE6DO43924 150 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 CRYGDP07320 174 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 LINC01556Q5JQF7 62 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 LELP1Q5T871 98 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 Q6ZSN1 163 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 SFRP2Q96HF1 295 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 SAMD10Q9BYL1 202 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 JPT2Q9H910 190 aa12.7□□□□□ -0.38
CLN3-227ENST00000567495 M0R381 172 aa12.69□□□□□ -0.38
CLN3-227ENST00000567495 EREGO14944 169 aa12.69□□□□□ -0.38
CLN3-227ENST00000567495 OR10J3Q5JRS4 329 aa12.69□□□□□ -0.38
CLN3-227ENST00000567495 SMIM12Q96EX1 92 aa12.69□□□□□ -0.38
CLN3-227ENST00000567495 KIAA1109Q2LD37 5005 aa12.69□□□□□ -0.38
CLN3-227ENST00000567495 MEF2BQ02080 365 aaPredicted RBP12.68□□□□□ -0.38
CLN3-227ENST00000567495 SPATA12Q7Z6I5 190 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms