RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 NOTCH1P46531 2555 aa22.2■■□□□ 1.14
CTCF-203ENST00000566078 SNURFLB1AK76 121 aa22.2■■□□□ 1.14
CTCF-203ENST00000566078 NTF3P20783 257 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 TWIST1Q15672 202 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 COX19Q49B96 90 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 SPANXN1Q5VSR9 72 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 TMEM136Q6ZRR5 245 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 C9orf85Q96MD7 179 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 GNB1LQ9BYB4 327 aa22.19■■□□□ 1.14
CTCF-203ENST00000566078 A0A1B0GW15 77 aa22.18■■□□□ 1.14
CTCF-203ENST00000566078 CACNG7P62955 275 aa22.18■■□□□ 1.14
CTCF-203ENST00000566078 ZNF705AQ6ZN79 300 aaPredicted RBP22.17■■□□□ 1.14
CTCF-203ENST00000566078 NBEAL1Q6ZS30 2694 aa22.17■■□□□ 1.14
CTCF-203ENST00000566078 S100A8P05109 93 aa22.17■■□□□ 1.14
CTCF-203ENST00000566078 ZNF415Q09FC8 603 aa22.17■■□□□ 1.14
CTCF-203ENST00000566078 MSRB1Q9NZV6 116 aa22.17■■□□□ 1.14
CTCF-203ENST00000566078 TRAPPC1Q9Y5R8 145 aa22.17■■□□□ 1.14
CTCF-203ENST00000566078 M0R381 172 aa22.16■■□□□ 1.14
CTCF-203ENST00000566078 FRZBQ92765 325 aa22.16■■□□□ 1.14
CTCF-203ENST00000566078 MGAM2Q2M2H8 2515 aa22.16■■□□□ 1.14
CTCF-203ENST00000566078 A8MZ25 164 aa22.15■■□□□ 1.14
CTCF-203ENST00000566078 TRGC2P03986 189 aa22.15■■□□□ 1.14
CTCF-203ENST00000566078 AZU1P20160 251 aa22.15■■□□□ 1.14
CTCF-203ENST00000566078 IGHV4-4A0A075B6R2 117 aa22.14■■□□□ 1.14
CTCF-203ENST00000566078 HLA-DQA1P01909 254 aa22.14■■□□□ 1.14
CTCF-203ENST00000566078 MT-ND6P03923 174 aa22.14■■□□□ 1.14
CTCF-203ENST00000566078 KPRPQ5T749 579 aaPredicted RBP22.14■■□□□ 1.14
CTCF-203ENST00000566078 MRPL18Q9H0U6 180 aaKnown RBP22.14■■□□□ 1.14
CTCF-203ENST00000566078 FABP9Q0Z7S8 132 aa22.13■■□□□ 1.13
CTCF-203ENST00000566078 C11orf72Q8NBR9 251 aa22.13■■□□□ 1.13
CTCF-203ENST00000566078 ZFP82Q8N141 532 aa22.13■■□□□ 1.13
CTCF-203ENST00000566078 GSN-AS1Q9NRJ2 163 aa22.13■■□□□ 1.13
CTCF-203ENST00000566078 DEFB135Q30KP9 77 aa22.12■■□□□ 1.13
CTCF-203ENST00000566078 GATD1Q8NB37 220 aa22.12■■□□□ 1.13
CTCF-203ENST00000566078 UBE2CO00762 179 aa22.11■■□□□ 1.13
CTCF-203ENST00000566078 NXPH4O95158 308 aa22.11■■□□□ 1.13
CTCF-203ENST00000566078 PRB2P02812 416 aaPredicted RBP22.11■■□□□ 1.13
CTCF-203ENST00000566078 TMEM263Q8WUH6 116 aaKnown RBP22.11■■□□□ 1.13
CTCF-203ENST00000566078 DMRTA1Q5VZB9 504 aa22.1■■□□□ 1.13
CTCF-203ENST00000566078 RNASE8Q8TDE3 154 aaKnown RBP22.1■■□□□ 1.13
CTCF-203ENST00000566078 TMA7Q9Y2S6 64 aaKnown RBP22.1■■□□□ 1.13
CTCF-203ENST00000566078 C1orf196B1AJZ1 125 aa22.09■■□□□ 1.13
CTCF-203ENST00000566078 ZNF493Q6ZR52 646 aa22.09■■□□□ 1.13
CTCF-203ENST00000566078 RCHY1Q96PM5 261 aa22.09■■□□□ 1.13
CTCF-203ENST00000566078 SLAQ13239 276 aa22.09■■□□□ 1.13
CTCF-203ENST00000566078 RRN3P1Q2M238 152 aa22.09■■□□□ 1.13
CTCF-203ENST00000566078 SYT8Q8NBV8 401 aa22.08■■□□□ 1.13
CTCF-203ENST00000566078 PHOX2AO14813 284 aa22.07■■□□□ 1.12
CTCF-203ENST00000566078 APCSP02743 223 aa22.07■■□□□ 1.12
CTCF-203ENST00000566078 C16orf74Q96GX8 76 aa22.07■■□□□ 1.12
CTCF-203ENST00000566078 DNHD1Q96M86 4753 aa22.07■■□□□ 1.12
CTCF-203ENST00000566078 TMEM191AQ9H0A3 160 aa22.06■■□□□ 1.12
CTCF-203ENST00000566078 TRGC1P0CF51 173 aa22.06■■□□□ 1.12
CTCF-203ENST00000566078 SMIM15Q7Z3B0 74 aa22.06■■□□□ 1.12
CTCF-203ENST00000566078 IL17DQ8TAD2 202 aa22.06■■□□□ 1.12
CTCF-203ENST00000566078 SPXQ9BT56 116 aa22.06■■□□□ 1.12
CTCF-203ENST00000566078 X6R8D5 127 aa22.05■■□□□ 1.12
CTCF-203ENST00000566078 NBEAL2Q6ZNJ1 2754 aa22.04■■□□□ 1.12
CTCF-203ENST00000566078 M0R2P5 195 aa22.04■■□□□ 1.12
CTCF-203ENST00000566078 EVI2AP22794 236 aa22.04■■□□□ 1.12
CTCF-203ENST00000566078 ZNF876PQ49A33 203 aa22.04■■□□□ 1.12
CTCF-203ENST00000566078 AP1S3Q96PC3 154 aa22.04■■□□□ 1.12
CTCF-203ENST00000566078 KIAA1644Q3SXP7 199 aa22.03■■□□□ 1.12
CTCF-203ENST00000566078 Q6ZWC4 215 aa22.03■■□□□ 1.12
CTCF-203ENST00000566078 AMN1Q8IY45 258 aa22.03■■□□□ 1.12
CTCF-203ENST00000566078 K7EIL1 84 aa22.02■■□□□ 1.12
CTCF-203ENST00000566078 RAB5BP61020 215 aa22.02■■□□□ 1.12
CTCF-203ENST00000566078 FAM104BQ5XKR9 115 aa22.02■■□□□ 1.11
CTCF-203ENST00000566078 RNF183Q96D59 192 aa22.02■■□□□ 1.11
CTCF-203ENST00000566078 NACAE9PAV3 2078 aa22.01■■□□□ 1.11
CTCF-203ENST00000566078 PLAC8L1A1L4L8 177 aa22.01■■□□□ 1.11
CTCF-203ENST00000566078 SMIM9A6NGZ8 99 aa22.01■■□□□ 1.11
CTCF-203ENST00000566078 C14orf178Q8N769 122 aaPredicted RBP22■■□□□ 1.11
CTCF-203ENST00000566078 OR11H2Q8NH07 326 aa22■■□□□ 1.11
CTCF-203ENST00000566078 JPT2Q9H910 190 aa22■■□□□ 1.11
CTCF-203ENST00000566078 MRPL16Q9NX20 251 aaKnown RBP22■■□□□ 1.11
CTCF-203ENST00000566078 PTH2Q96A98 100 aa21.99■■□□□ 1.11
CTCF-203ENST00000566078 DPH3P1Q9H4G8 78 aa21.98■■□□□ 1.11
CTCF-203ENST00000566078 NOP10Q9NPE3 64 aaKnown RBP21.98■■□□□ 1.11
CTCF-203ENST00000566078 RNF185Q96GF1 192 aa21.97■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BKO60814 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BJP06899 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 SMIM17P0DL12 118 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 RAB4AP20338 218 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BOP23527 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BBP33778 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BDP58876 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BCP62807 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 DAZ2Q13117 558 aaKnown RBP21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST2H2BEQ16778 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 MRPL51Q4U2R6 128 aaKnown RBP21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST2H2BFQ5QNW6 126 aaPredicted RBP21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BHQ93079 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BNQ99877 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 HIST1H2BMQ99879 126 aa21.96■■□□□ 1.11
CTCF-203ENST00000566078 TRGV1A0A0A0MS02 117 aa21.95■■□□□ 1.1
CTCF-203ENST00000566078 PIK3CD-AS1Q5SR53 167 aa21.95■■□□□ 1.1
CTCF-203ENST00000566078 A0A087WWL8 130 aa21.95■■□□□ 1.1
CTCF-203ENST00000566078 SRIP30626 198 aa21.95■■□□□ 1.1
CTCF-203ENST00000566078 EMP1P54849 157 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms