RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 K7EP13 123 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 ZNF345Q14585 488 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 PIK3CD-AS1Q5SR53 167 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 DNLZQ5SXM8 178 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 UFSP1Q6NVU6 142 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 Q6ZSN1 163 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 PCNPQ8WW12 178 aaKnown RBP10.05□□□□□ -0.8
CLN3-213ENST00000565047 LY96Q9Y6Y9 160 aa10.05□□□□□ -0.8
CLN3-213ENST00000565047 MAP1LC3B2A6NCE7 125 aa10.04□□□□□ -0.8
CLN3-213ENST00000565047 FABP5P3A8MUU1 101 aa10.04□□□□□ -0.8
CLN3-213ENST00000565047 ZFP69Q49AA0 526 aa10.04□□□□□ -0.8
CLN3-213ENST00000565047 SH2D6Q7Z4S9 175 aa10.04□□□□□ -0.8
CLN3-213ENST00000565047 MAP1LC3BQ9GZQ8 125 aa10.04□□□□□ -0.8
CLN3-213ENST00000565047 TRBV6-1A0A0K0K1D8 114 aa10.03□□□□□ -0.8
CLN3-213ENST00000565047 HMSDA8MTL9 139 aa10.03□□□□□ -0.8
CLN3-213ENST00000565047 IFNA7P01567 189 aa10.03□□□□□ -0.8
CLN3-213ENST00000565047 MBD3L1Q8WWY6 194 aa10.03□□□□□ -0.8
CLN3-213ENST00000565047 ZC2HC1AQ96GY0 325 aa10.03□□□□□ -0.8
CLN3-213ENST00000565047 TRAV9-2A0A087WT02 112 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 IGHV3-73A0A0B4J1V6 119 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 KRBOX1C9JBD0 128 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 SEC11BP0C7V7 166 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 LINC00694P0DN24 101 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 PPT1P50897 306 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 RHOHQ15669 191 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 NFE4Q86UQ8 179 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 PARLQ9H300 379 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 IL36BQ9NZH7 164 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 Q9UF83 564 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 ZFP30Q9Y2G7 519 aa10.02□□□□□ -0.81
CLN3-213ENST00000565047 LTAP01374 205 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 MGST1P10620 155 aaKnown RBP10.01□□□□□ -0.81
CLN3-213ENST00000565047 ZNF674Q2M3X9 581 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 LINC01556Q5JQF7 62 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 DMRTA1Q5VZB9 504 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 ZFP2Q6ZN57 461 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 FMC1Q96HJ9 113 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 TCEAL7Q9BRU2 100 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 JPT2Q9H910 190 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 SCRT2Q9NQ03 307 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 MSRB1Q9NZV6 116 aa10.01□□□□□ -0.81
CLN3-213ENST00000565047 A0A087WTM6 91 aa10□□□□□ -0.81
CLN3-213ENST00000565047 IGHV3-38A0A0C4DH36 116 aa10□□□□□ -0.81
CLN3-213ENST00000565047 SH2D1AO60880 128 aa10□□□□□ -0.81
CLN3-213ENST00000565047 EVI2AP22794 236 aa10□□□□□ -0.81
CLN3-213ENST00000565047 FUSP35637 526 aaKnown RBP eCLIP10□□□□□ -0.81
CLN3-213ENST00000565047 NHLRC2Q8NBF2 726 aa10□□□□□ -0.81
CLN3-213ENST00000565047 PRADC1Q9BSG0 188 aa10□□□□□ -0.81
CLN3-213ENST00000565047 SAMD10Q9BYL1 202 aa10□□□□□ -0.81
CLN3-213ENST00000565047 PGPEP1Q9NXJ5 209 aa10□□□□□ -0.81
CLN3-213ENST00000565047 A8MWV9 139 aa9.99□□□□□ -0.81
CLN3-213ENST00000565047 B4DEV8 164 aa9.99□□□□□ -0.81
CLN3-213ENST00000565047 PAGE4O60829 102 aa9.99□□□□□ -0.81
CLN3-213ENST00000565047 CRYGDP07320 174 aa9.99□□□□□ -0.81
CLN3-213ENST00000565047 ASIPP42127 132 aa9.99□□□□□ -0.81
CLN3-213ENST00000565047 LINC01559Q495D7 138 aa9.99□□□□□ -0.81
CLN3-213ENST00000565047 A0A0D9SG52 128 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 IBA57-AS1B1ANH7 110 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 UMAD1C9J7I0 102 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 BCL2L11O43521 198 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 ARMS2P0C7Q2 107 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 ERVFC1-1P60608 527 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 LELP1Q5T871 98 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 Q8N1X5 172 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 STOML3Q8TAV4 291 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 MLST8Q9BVC4 326 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 GTSF1LQ9H1H1 148 aa9.98□□□□□ -0.81
CLN3-213ENST00000565047 LRCOL1A6NCL2 159 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 H3BVH4 76 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 S100A4P26447 101 aaKnown RBP9.97□□□□□ -0.81
CLN3-213ENST00000565047 FAM162BQ5T6X4 162 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 CST9LP1Q5W188 147 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 C10orf126Q8N4M7 172 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 MAPKAPK5-AS1Q8N8E1 139 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 ATP6V0E2Q8NHE4 81 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 SFT2D1Q8WV19 159 aa9.97□□□□□ -0.81
CLN3-213ENST00000565047 GRIFINA4D1Z8 144 aa9.96□□□□□ -0.82
CLN3-213ENST00000565047 M0R036 132 aa9.96□□□□□ -0.82
CLN3-213ENST00000565047 LGALSLQ3ZCW2 172 aaPredicted RBP9.96□□□□□ -0.82
CLN3-213ENST00000565047 CDPF1Q6NVV7 123 aa9.96□□□□□ -0.82
CLN3-213ENST00000565047 C14orf178Q8N769 122 aaPredicted RBP9.96□□□□□ -0.82
CLN3-213ENST00000565047 FAM213BQ8TBF2 198 aa9.96□□□□□ -0.82
CLN3-213ENST00000565047 XGP55808 180 aa9.95□□□□□ -0.82
CLN3-213ENST00000565047 UBE2G1P62253 170 aa9.95□□□□□ -0.82
CLN3-213ENST00000565047 SFRP2Q96HF1 295 aa9.95□□□□□ -0.82
CLN3-213ENST00000565047 ZNF471Q9BX82 626 aaPredicted RBP9.95□□□□□ -0.82
CLN3-213ENST00000565047 TRAV8-6A0A0B4J262 113 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 SCO2A0A1W2PP80 73 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 CCL20P78556 96 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 OR10J3Q5JRS4 329 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 TMUB2Q71RG4 321 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 Q8N3U1 123 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 BOLA1Q9Y3E2 137 aa9.94□□□□□ -0.82
CLN3-213ENST00000565047 VPS13BQ7Z7G8 4022 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 KANTRA0A1W2PQU2 76 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 GAGE12JA6NER3 117 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 H2AFB1P0C5Y9 115 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 AKR1C3P42330 323 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 KRTAP10-1P60331 282 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 GAGE1Q13065 139 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms