RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 INPP1P49441 399 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 TAS2R46P59540 309 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 AARDQ4LEZ3 155 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 C1orf137Q5JT78 98 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 ZNF506Q5JVG8 444 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 TMEM182Q6ZP80 229 aaPredicted RBP2.9□□□□□ -1.95
VPS35-204ENST00000563884 C15orf54Q8N8G6 183 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 SUN5Q8TC36 379 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 MRPL53Q96EL3 112 aaKnown RBP2.9□□□□□ -1.95
VPS35-204ENST00000563884 C9orf85Q96MD7 179 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 IFT46Q9NQC8 304 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 MUC21A0A0G2JKD1 596 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 IFITM5A6NNB3 132 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 SSX5O60225 188 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 ZNF253O75346 499 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 HYPMO75409 117 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 B3GALNT1O75752 331 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 RPS10P46783 165 aaKnown RBP2.89□□□□□ -1.95
VPS35-204ENST00000563884 EIF5AP63241 154 aaKnown RBP2.89□□□□□ -1.95
VPS35-204ENST00000563884 TMEM78Q5T7P6 136 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 ENHOQ6UWT2 76 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 FAM159AQ6UWV7 190 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 LINC00173Q6ZV60 143 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 MND1Q9BWT6 205 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 FXYD6Q9H0Q3 95 aa2.89□□□□□ -1.95
VPS35-204ENST00000563884 TRBV7-9A0A0J9YWB2 115 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 TMEM262E9PQX1 116 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 IGLV7-43P04211 117 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 OR5G3P0C626 314 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 LINC00694P0DN24 101 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 HIST1H1EP10412 219 aaKnown RBP2.88□□□□□ -1.95
VPS35-204ENST00000563884 CALB2P22676 271 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 MYL9P24844 172 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 RAB11AP62491 216 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 CTAG1AP78358 180 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 ZNF674Q2M3X9 581 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 MUC21Q5SSG8 566 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 LCE1CQ5T751 118 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 ACOT7LQ6ZUV0 252 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 PRSS48Q7RTY5 328 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 ZNF546Q86UE3 836 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 BPIFA4PQ86YQ2 179 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 CROCCP3Q8IVE0 287 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 DHRSXQ8N5I4 330 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 TSKUQ8WUA8 353 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 APH1BQ8WW43 257 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 UFD1Q92890 307 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 C20orf85Q9H1P6 137 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 PRELID1Q9Y255 219 aa2.88□□□□□ -1.95
VPS35-204ENST00000563884 A0A096LNI7 61 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 A0A0A6YYH2 397 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 LOC100130705A0A1B0GUX0 176 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 FAM168BA1KXE4 195 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 A6NJ64 397 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 SLC17A3O00476 420 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 UBE2MP61081 183 aaKnown RBP2.87□□□□□ -1.95
VPS35-204ENST00000563884 AKR1C1Q04828 323 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.87□□□□□ -1.95
VPS35-204ENST00000563884 OR13C8Q8NGS7 320 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 FAM19A4Q96LR4 140 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 RETNLBQ9BQ08 111 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 PPDPFQ9H3Y8 114 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 AP4S1Q9Y587 144 aa2.87□□□□□ -1.95
VPS35-204ENST00000563884 TRAV8-4A0A0B4J246 113 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 EIF3GO75821 320 aaKnown RBP eCLIP2.86□□□□□ -1.95
VPS35-204ENST00000563884 P01737 135 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 IL5P05113 134 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 RAB3BP20337 219 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 PLP1P60201 277 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 RND3P61587 244 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 SELENOTP62341 195 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 DNAL1Q4LDG9 190 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 CFAP126Q5VTH2 177 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 DTD1Q8TEA8 209 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 POMPQ9Y244 141 aa2.86□□□□□ -1.95
VPS35-204ENST00000563884 IGHV3-73A0A0B4J1V6 119 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 TRAV1-2A0A0B4J238 106 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 C3orf85A0A1B0GTC6 90 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 WRBO00258 174 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 CTDSPLO15194 276 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 LINC00869P0C866 280 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 PGAM2P15259 253 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 RCVRNP35243 200 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 PIGPP57054 158 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 RAB2AP61019 212 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 ZFP2Q6ZN57 461 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 Q6ZVH6 145 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 FP248Q71RG6 208 aaPredicted RBP2.85□□□□□ -1.95
VPS35-204ENST00000563884 ZFAND2AQ8N6M9 145 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 OR2G3Q8NGZ4 309 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 TERB2Q8NHR7 220 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 KCNS1Q96KK3 526 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 MGLLQ99685 303 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 ACOT13Q9NPJ3 140 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 RHBDL2Q9NX52 303 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 ANAPC11Q9NYG5 84 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 Q9UF83 564 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 NAGKQ9UJ70 344 aa2.85□□□□□ -1.95
VPS35-204ENST00000563884 LOC100506127A0A0U1RQW1 187 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms