RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 RPL7L1Q6DKI1 246 aaKnown RBP11.57□□□□□ -0.56
VPS9D1-203ENST00000563798 INO80EQ8NBZ0 244 aaPredicted RBP11.57□□□□□ -0.56
VPS9D1-203ENST00000563798 TRAV8-6A0A0B4J262 113 aa11.56□□□□□ -0.56
VPS9D1-203ENST00000563798 KRTAP10-1P60331 282 aa11.56□□□□□ -0.56
VPS9D1-203ENST00000563798 ZNF726P1Q15940 193 aa11.56□□□□□ -0.56
VPS9D1-203ENST00000563798 LELP1Q5T871 98 aa11.56□□□□□ -0.56
VPS9D1-203ENST00000563798 ZFP2Q6ZN57 461 aa11.56□□□□□ -0.56
VPS9D1-203ENST00000563798 BORCS7-ASMTA0A0B4J1R7 106 aa11.55□□□□□ -0.56
VPS9D1-203ENST00000563798 IGKV3D-20A0A0C4DH25 116 aa11.55□□□□□ -0.56
VPS9D1-203ENST00000563798 CTXND1A0A1B0GTU2 59 aa11.55□□□□□ -0.56
VPS9D1-203ENST00000563798 LRCOL1A6NCL2 159 aa11.55□□□□□ -0.56
VPS9D1-203ENST00000563798 COX8CQ7Z4L0 72 aa11.55□□□□□ -0.56
VPS9D1-203ENST00000563798 NKX6-2Q9C056 277 aaPredicted RBP11.55□□□□□ -0.56
VPS9D1-203ENST00000563798 FABP5P3A8MUU1 101 aa11.54□□□□□ -0.56
VPS9D1-203ENST00000563798 EPM2AB3EWF7 344 aa11.54□□□□□ -0.56
VPS9D1-203ENST00000563798 DNLZQ5SXM8 178 aa11.54□□□□□ -0.56
VPS9D1-203ENST00000563798 LINC00479Q96M42 142 aa11.54□□□□□ -0.56
VPS9D1-203ENST00000563798 GTSF1LQ9H1H1 148 aa11.54□□□□□ -0.56
VPS9D1-203ENST00000563798 ARL2-SNX15V9GYD0 113 aa11.54□□□□□ -0.56
VPS9D1-203ENST00000563798 IGHV3-73A0A0B4J1V6 119 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 A8MWV9 139 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 LINC00694P0DN24 101 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 GCSHP23434 173 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 OR10J3Q5JRS4 329 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 ATP6V0E2Q8NHE4 81 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 NTN5Q8WTR8 489 aaPredicted RBP11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 HIST1H2BAQ96A08 127 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 PARLQ9H300 379 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 IL36BQ9NZH7 164 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 FAT1Q14517 4588 aa11.53□□□□□ -0.56
VPS9D1-203ENST00000563798 FXYD6-FXYD2A0A087WZ82 144 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 TRAV34A0A0B4J273 112 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 FAM74A7A6NL05 159 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 G3V3Q6 166 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 LAGE3Q14657 143 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 UFSP1Q6NVU6 142 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 Q6ZSN1 163 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 OR2T35Q8NGX2 323 aa11.52□□□□□ -0.57
VPS9D1-203ENST00000563798 PEX7O00628 323 aa11.51□□□□□ -0.57
VPS9D1-203ENST00000563798 IFNA7P01567 189 aa11.51□□□□□ -0.57
VPS9D1-203ENST00000563798 ASIPP42127 132 aa11.51□□□□□ -0.57
VPS9D1-203ENST00000563798 Q86TA4 180 aa11.51□□□□□ -0.57
VPS9D1-203ENST00000563798 PSCAO43653 123 aa11.5□□□□□ -0.57
VPS9D1-203ENST00000563798 S100A4P26447 101 aaKnown RBP11.5□□□□□ -0.57
VPS9D1-203ENST00000563798 CRIP1P50238 77 aa11.5□□□□□ -0.57
VPS9D1-203ENST00000563798 ZFP30Q9Y2G7 519 aa11.5□□□□□ -0.57
VPS9D1-203ENST00000563798 TRBV6-1A0A0K0K1D8 114 aa11.49□□□□□ -0.57
VPS9D1-203ENST00000563798 UBE2G2P60604 165 aa11.49□□□□□ -0.57
VPS9D1-203ENST00000563798 AKR1C8PQ5T2L2 129 aa11.49□□□□□ -0.57
VPS9D1-203ENST00000563798 TCEAL7Q9BRU2 100 aa11.49□□□□□ -0.57
VPS9D1-203ENST00000563798 CYTL1Q9NRR1 136 aa11.49□□□□□ -0.57
VPS9D1-203ENST00000563798 IGLV5-52A0A0A0MRZ9 124 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 KRBOX1C9JBD0 128 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 IGHV3-30P01768 117 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 IGHV3-33P01772 117 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 IGHV3-30-3P0DP02 117 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 IGHV3-30-5P0DP03 117 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 FHITP49789 147 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 LGALSLQ3ZCW2 172 aaPredicted RBP11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 Q8N814 137 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 ZC2HC1AQ96GY0 325 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 TMEM70Q9BUB7 260 aa11.48□□□□□ -0.57
VPS9D1-203ENST00000563798 B4DEV8 164 aa11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 FGF8P55075 233 aaPredicted RBP11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 DMRTA1Q5VZB9 504 aa11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 FRZBQ92765 325 aa11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 FMC1Q96HJ9 113 aa11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 TM2D2Q9BX73 214 aa11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 HERC1Q15751 4861 aa11.47□□□□□ -0.57
VPS9D1-203ENST00000563798 A0A087WWC5 75 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 MAP1LC3B2A6NCE7 125 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 GAGE12JA6NER3 117 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 RHODO00212 210 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 ARMS2P0C7Q2 107 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 GAGE1Q13065 139 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 GAGE4Q13068 117 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 GAGE5Q13069 117 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 GAGE13Q4V321 117 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 Q5VSD8 79 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 SYT8Q8NBV8 401 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 SAMD10Q9BYL1 202 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 MAP1LC3BQ9GZQ8 125 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 JPT2Q9H910 190 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 Q9HAA7 133 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 Q9UF83 564 aa11.46□□□□□ -0.57
VPS9D1-203ENST00000563798 H3BVH4 76 aa11.45□□□□□ -0.58
VPS9D1-203ENST00000563798 SH2D1AO60880 128 aa11.45□□□□□ -0.58
VPS9D1-203ENST00000563798 C1QBP02746 253 aa11.45□□□□□ -0.58
VPS9D1-203ENST00000563798 INAFM2P0DMQ5 153 aa11.45□□□□□ -0.58
VPS9D1-203ENST00000563798 ZNF674Q2M3X9 581 aa11.45□□□□□ -0.58
VPS9D1-203ENST00000563798 FAM162BQ5T6X4 162 aa11.45□□□□□ -0.58
VPS9D1-203ENST00000563798 TRAV8-3A0A0A6YYJ7 113 aa11.44□□□□□ -0.58
VPS9D1-203ENST00000563798 ARPC5O15511 151 aa11.44□□□□□ -0.58
VPS9D1-203ENST00000563798 LTAP01374 205 aa11.44□□□□□ -0.58
VPS9D1-203ENST00000563798 LINC01559Q495D7 138 aa11.44□□□□□ -0.58
VPS9D1-203ENST00000563798 C14orf178Q8N769 122 aaPredicted RBP11.44□□□□□ -0.58
VPS9D1-203ENST00000563798 SFRP2Q96HF1 295 aa11.44□□□□□ -0.58
VPS9D1-203ENST00000563798 UBE2G1P62253 170 aa11.43□□□□□ -0.58
VPS9D1-203ENST00000563798 TOR2AQ5JU69 321 aa11.43□□□□□ -0.58
VPS9D1-203ENST00000563798 Q8N3U1 123 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms