RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 APOC4P55056 127 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 Q8N1Y9 231 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 MDFICQ9P1T7 246 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 U3KQE9 123 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 K7EQG2 157 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 HLA-DQA1P01909 254 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 GATA1P15976 413 aaPredicted RBP4.08□□□□□ -1.76
VPS13C-209ENST00000560637 PLP1P60201 277 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 UBE2DNLQ8IWF7 75 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 LINC00528Q8N1L1 170 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 CARHSP1Q9Y2V2 147 aaKnown RBP4.08□□□□□ -1.76
VPS13C-209ENST00000560637 CR1P17927 2039 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 A0A0J9YX75 114 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 TMEM89A2RUT3 159 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 PHOX2AO14813 284 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 TCAPO15273 167 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 OR10J3Q5JRS4 329 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 ADAMTSL5Q6ZMM2 481 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 LINC00322Q6ZN03 302 aaPredicted RBP4.08□□□□□ -1.76
VPS13C-209ENST00000560637 Q6ZN92 141 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 KIR2DL4Q99706 377 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 MAP1LC3AQ9H492 121 aa4.08□□□□□ -1.76
VPS13C-209ENST00000560637 CMC4P56277 68 aaPredicted RBP4.07□□□□□ -1.76
VPS13C-209ENST00000560637 DEFA6Q01524 100 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 ELOBQ15370 118 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 CLPSL2Q6UWE3 100 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 ZNF705AQ6ZN79 300 aaPredicted RBP4.07□□□□□ -1.76
VPS13C-209ENST00000560637 TMEM18Q96B42 140 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 BSNQ9UPA5 3926 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 FSHBP01225 129 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 PRIMA1Q86XR5 153 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 MDFIQ99750 246 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 TRAV8-2A0A0B4J237 113 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 C20orf202A1L168 122 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 NPIPB6E9PJ23 425 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 H3BMM0 161 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 NDUFA7O95182 113 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 BRI3O95415 125 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 ODF3L2Q3SX64 289 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 ORMDL3Q8N138 153 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 EIF4E3Q8N5X7 224 aaKnown RBP4.07□□□□□ -1.76
VPS13C-209ENST00000560637 ZNRF2Q8NHG8 242 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 TOMM7Q9P0U1 55 aa4.07□□□□□ -1.76
VPS13C-209ENST00000560637 A0A087WX48 190 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 RNASE13Q5GAN3 156 aaKnown RBP4.06□□□□□ -1.76
VPS13C-209ENST00000560637 NIT2Q9NQR4 276 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 AP5S1Q9NUS5 200 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 KLF12Q9Y4X4 402 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 IGHV3-64A0A075B6Q5 118 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 IGHV4-30-4P0DP06 118 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 DPH3Q96FX2 82 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 C11orf68Q9H3H3 251 aaKnown RBP4.06□□□□□ -1.76
VPS13C-209ENST00000560637 SPATA3Q8NHX4 192 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 MYOZ3Q8TDC0 251 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 C1orf43Q9BWL3 253 aa4.06□□□□□ -1.76
VPS13C-209ENST00000560637 A0A0U1RRA0 63 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 LTAP01374 205 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 PRR9Q5T870 116 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 Q6ZTI0 123 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 PRO1933Q9H354 126 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 ST20Q9HBF5 79 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 V9GYV3 84 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 A8MWP6 167 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 LGALS9O00182 355 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 SERF1AO75920 110 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 LEPROTL1O95214 131 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 HLA-DRB4P13762 266 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 ZFAND6Q6FIF0 208 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 HLA-DRB4X5D2U9 266 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 FBLL1A6NHQ2 334 aaKnown RBP4.05□□□□□ -1.76
VPS13C-209ENST00000560637 IGLL5B9A064 214 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 H7C1H1 209 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 SNAI2O43623 268 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 MT-ND6P03923 174 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 TYMSP04818 313 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 P0DMU3 169 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 FAM231AP0DMU4 169 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 FAM231CP0DMU5 169 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 INSL3P51460 131 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 KRTAP10-3P60369 221 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 RPL36AP83881 106 aaKnown RBP4.05□□□□□ -1.76
VPS13C-209ENST00000560637 DCANP1Q8TF63 244 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 RPL36ALQ969Q0 106 aaKnown RBP4.05□□□□□ -1.76
VPS13C-209ENST00000560637 C11orf52Q96A22 123 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 PAM16Q9Y3D7 125 aa4.05□□□□□ -1.76
VPS13C-209ENST00000560637 PDZD2O15018 2839 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 FBN1P35555 2871 aaKnown RBP4.04□□□□□ -1.76
VPS13C-209ENST00000560637 F2Z2F3 143 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 SUMO2P61956 95 aaKnown RBP4.04□□□□□ -1.76
VPS13C-209ENST00000560637 SLAQ13239 276 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 COTL1Q14019 142 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 FAM222AQ5U5X8 452 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 TMEM256Q8N2U0 113 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 PACRGQ96M98 296 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-209ENST00000560637 DPH3P1Q9H4G8 78 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 TRAV13-1A0A0B4J241 112 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 PAX4O43316 350 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 G0S2P27469 103 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 TMEM170BQ5T4T1 132 aa4.04□□□□□ -1.76
VPS13C-209ENST00000560637 MRPL53Q96EL3 112 aaKnown RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms