RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TNFRSF13BO14836 293 aaPredicted RBP8.69□□□□□ -1.02
LDLR-208ENST00000558518 GATA3P23771 443 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 NFE4Q86UQ8 179 aa8.69□□□□□ -1.02
LDLR-208ENST00000558518 COL27A1Q8IZC6 1860 aaPredicted RBP8.69□□□□□ -1.02
LDLR-208ENST00000558518 IGHV7-81A0A0B4J1V7 117 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 PRSS47A8MTI9 375 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 BUB3O43684 328 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 NRACQ8N912 160 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 TMEM238LA0A1B0GVL6 79 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 A6NJY4 79 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 C9JAW5 83 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 GATD1Q8NB37 220 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 ANAPC13Q9BS18 74 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 TP53TG1Q9Y2A0 90 aa8.68□□□□□ -1.02
LDLR-208ENST00000558518 USP9XQ93008 2570 aaPredicted RBP8.68□□□□□ -1.02
LDLR-208ENST00000558518 MORN3Q6PF18 240 aaPredicted RBP8.68□□□□□ -1.02
LDLR-208ENST00000558518 FAM208BQ5VWN6 2430 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 XGP55808 180 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 RNF183Q96D59 192 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 TSPAN13O95857 204 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 LINC01559Q495D7 138 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 TRPT1Q86TN4 253 aaKnown RBP8.67□□□□□ -1.02
LDLR-208ENST00000558518 MRAP2Q96G30 205 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 ZMAT4Q9H898 229 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 CACNA1AO00555 2505 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 ASIPP42127 132 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 Q6ZS46 218 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 OR10J6PQ8NGY7 276 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 BAALCQ8WXS3 180 aa8.67□□□□□ -1.02
LDLR-208ENST00000558518 ZNF575Q86XF7 245 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 TRBV7-3A0A075B6L6 115 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 IGHV7-4-1A0A0J9YVY3 117 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 C11orf86A6NJI1 115 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 RNASE13Q5GAN3 156 aaKnown RBP8.66□□□□□ -1.02
LDLR-208ENST00000558518 C3orf56Q8N813 242 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 C1QTNF4Q9BXJ3 329 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 IGHV3-73A0A0B4J1V6 119 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 B5MCH6 92 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 TCL1BO95988 128 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 TRBV12-3P01733 135 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 ORMDL2Q53FV1 153 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 BRD3OSQ6XYD6 125 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 RASL10AQ92737 203 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 MSRB2Q9Y3D2 182 aa8.66□□□□□ -1.02
LDLR-208ENST00000558518 A8MWV9 139 aa8.65□□□□□ -1.02
LDLR-208ENST00000558518 LY6LH3BQJ8 138 aa8.65□□□□□ -1.02
LDLR-208ENST00000558518 IGLV2-18A0A075B6J9 118 aa8.65□□□□□ -1.02
LDLR-208ENST00000558518 LGALS3P17931 250 aaKnown RBP8.65□□□□□ -1.02
LDLR-208ENST00000558518 SMCPP49901 116 aaPredicted RBP8.65□□□□□ -1.02
LDLR-208ENST00000558518 HERVK_113P61574 105 aa8.65□□□□□ -1.02
LDLR-208ENST00000558518 HRNRQ86YZ3 2850 aaPredicted RBP8.65□□□□□ -1.03
LDLR-208ENST00000558518 A0A0U1RRA0 63 aa8.65□□□□□ -1.03
LDLR-208ENST00000558518 ZNF56Q15929 161 aa8.65□□□□□ -1.03
LDLR-208ENST00000558518 SLC50A1Q9BRV3 221 aa8.65□□□□□ -1.03
LDLR-208ENST00000558518 PF4V1P10720 104 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 ZFP36P26651 326 aaKnown RBP8.64□□□□□ -1.03
LDLR-208ENST00000558518 C20orf173Q96LM9 149 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 RNF5Q99942 180 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 TRAV12-3A0A0B4J271 114 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 CD7P09564 240 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 FOXC1Q12948 553 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 DPH3P1Q9H4G8 78 aa8.64□□□□□ -1.03
LDLR-208ENST00000558518 SAA4P35542 130 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 FHL3Q13643 280 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 UNQ9165/PRO28630Q6UXU0 137 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 Q6ZUT4 128 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 ANKRD29Q8N6D5 301 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 EEF1AKMT3Q96AZ1 226 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 CCDC140Q96MF4 163 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 SPATA25Q9BR10 227 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 ACACBO00763 2458 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 ZFHX3Q15911 3703 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 TRAV12-2A0A075B6T6 113 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 CRIP2P52943 208 aaPredicted RBP8.63□□□□□ -1.03
LDLR-208ENST00000558518 Q8N9W7 124 aa8.63□□□□□ -1.03
LDLR-208ENST00000558518 CDSNQ15517 529 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 TEX29Q8N6K0 151 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 PRO0461Q9UI25 63 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 CFAP126Q5VTH2 177 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 IGFL3Q6UXB1 125 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 NPBQ8NG41 125 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 PRO3102Q9H379 93 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 TCF15Q12870 199 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 TAL2Q16559 108 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 OR11H6Q8NGC7 330 aa8.62□□□□□ -1.03
LDLR-208ENST00000558518 NEXN-AS1Q8NBZ9 246 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 CDIP1Q9H305 208 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 TRAV21A0A0B4J279 112 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 JMJD1CQ15652 2540 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 FAM159AQ6UWV7 190 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 Q8NA96 180 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 NTN5Q8WTR8 489 aaPredicted RBP8.61□□□□□ -1.03
LDLR-208ENST00000558518 ZFAND3Q9H8U3 227 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 A4D1N5 150 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 PPDPFLQ8WWR9 84 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 SPXQ9BT56 116 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 ZNF580Q9UK33 172 aa8.61□□□□□ -1.03
LDLR-208ENST00000558518 CLPSL1A2RUU4 121 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 TSPEAR-AS2P59090 65 aa8.6□□□□□ -1.03
LDLR-208ENST00000558518 PIP4P1Q86T03 277 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms