RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 KRTAP10-3P60369 221 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 ANXA2RQ3ZCQ2 193 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 FAM159AQ6UWV7 190 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 FAM19A2Q8N3H0 131 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 OR10AG1Q8NH19 301 aa12.57□□□□□ -0.4
LDLR-206ENST00000557958 C3orf79P0CE67 100 aa12.56□□□□□ -0.4
LDLR-206ENST00000557958 FA2HQ7L5A8 372 aa12.56□□□□□ -0.4
LDLR-206ENST00000557958 PRSS3P2Q8NHM4 247 aa12.56□□□□□ -0.4
LDLR-206ENST00000557958 TRAV25A0A0B4J276 109 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 OR4C46A6NHA9 309 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 CDKN1BP46527 198 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 SPATA45Q537H7 98 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 TMEM61Q8N0U2 210 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 SPAG8Q99932 426 aaPredicted RBP12.55□□□□□ -0.4
LDLR-206ENST00000557958 AP5S1Q9NUS5 200 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 MSRB1Q9NZV6 116 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 UQCR10Q9UDW1 63 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 DEFB114Q30KQ6 69 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 Q6ZQT7 251 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 PHLDA3Q9Y5J5 127 aa12.55□□□□□ -0.4
LDLR-206ENST00000557958 ZNF25P17030 456 aaPredicted RBP12.54□□□□□ -0.4
LDLR-206ENST00000557958 PMCHL1Q16048 86 aa12.54□□□□□ -0.4
LDLR-206ENST00000557958 SIGLEC8Q9NYZ4 499 aa12.54□□□□□ -0.4
LDLR-206ENST00000557958 DLEU1O43261 78 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 IGLC3P0DOY3 106 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 URB1-AS1Q96HZ7 61 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 TIMM8BQ9Y5J9 83 aaPredicted RBP12.53□□□□□ -0.4
LDLR-206ENST00000557958 C20orf202A1L168 122 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 G0S2P27469 103 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 DEFB131AP59861 70 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 COL5A1-AS1Q5SY13 56 aa12.53□□□□□ -0.4
LDLR-206ENST00000557958 NIPBLQ6KC79 2804 aaeCLIP12.52□□□□□ -0.4
LDLR-206ENST00000557958 TRAV12-3A0A0B4J271 114 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 IGKV3-20P01619 116 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 HLA-DRB4P13762 266 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 KIR3DS1Q14943 382 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 RNF185Q96GF1 192 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 TMEM208Q9BTX3 173 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 SCRT2Q9NQ03 307 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 HLA-DRB4X5D2U9 266 aa12.52□□□□□ -0.41
LDLR-206ENST00000557958 IGHV1-24A0A0C4DH33 117 aa12.51□□□□□ -0.41
LDLR-206ENST00000557958 CD300EQ496F6 205 aaPredicted RBP12.51□□□□□ -0.41
LDLR-206ENST00000557958 MAP1LC3AQ9H492 121 aa12.51□□□□□ -0.41
LDLR-206ENST00000557958 M0R381 172 aa12.51□□□□□ -0.41
LDLR-206ENST00000557958 LEPROTL1O95214 131 aa12.51□□□□□ -0.41
LDLR-206ENST00000557958 EVI2AP22794 236 aa12.51□□□□□ -0.41
LDLR-206ENST00000557958 HSPB8Q9UJY1 196 aa12.51□□□□□ -0.41
LDLR-206ENST00000557958 TEP1Q99973 2627 aaKnown RBP12.5□□□□□ -0.41
LDLR-206ENST00000557958 BTF3P20290 206 aaKnown RBP12.5□□□□□ -0.41
LDLR-206ENST00000557958 SPINK13Q1W4C9 94 aa12.5□□□□□ -0.41
LDLR-206ENST00000557958 AP1S3Q96PC3 154 aa12.5□□□□□ -0.41
LDLR-206ENST00000557958 SETD2Q9BYW2 2564 aaPredicted RBP12.5□□□□□ -0.41
LDLR-206ENST00000557958 GNRH2O43555 120 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 NPYP01303 97 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 CD7P09564 240 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 KRTAP24-1Q3LI83 254 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 PRIMA1Q86XR5 153 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 MRAP2Q96G30 205 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 C2CD3Q4AC94 2353 aa12.49□□□□□ -0.41
LDLR-206ENST00000557958 LOC389332A0A1B0GUA5 103 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 A8MTW9 85 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 ADARB2-AS1A8MUL3 147 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 NCR2O95944 276 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 RNASE3P12724 160 aaKnown RBP12.48□□□□□ -0.41
LDLR-206ENST00000557958 IFI27P40305 119 aaPredicted RBP12.48□□□□□ -0.41
LDLR-206ENST00000557958 HNRNPA3P51991 378 aaKnown RBP12.48□□□□□ -0.41
LDLR-206ENST00000557958 AMTNQ6UX39 209 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 NDUFA11Q86Y39 141 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 DPH3P1Q9H4G8 78 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 MAP6D1Q9H9H5 199 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 NXT2Q9NPJ8 142 aaKnown RBP12.48□□□□□ -0.41
LDLR-206ENST00000557958 GOLT1BQ9Y3E0 138 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 JMJD1CQ15652 2540 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 KNCNA6PVL3 124 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 SMKR1H3BMG3 65 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 H3BMM0 161 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 TMEM70Q9BUB7 260 aa12.48□□□□□ -0.41
LDLR-206ENST00000557958 TRAV12-2A0A075B6T6 113 aa12.47□□□□□ -0.41
LDLR-206ENST00000557958 IGHV1OR15-1A0A075B7D0 117 aa12.47□□□□□ -0.41
LDLR-206ENST00000557958 NXPH4O95158 308 aa12.47□□□□□ -0.41
LDLR-206ENST00000557958 TNFRSF6BO95407 300 aa12.47□□□□□ -0.41
LDLR-206ENST00000557958 TRAV9-2A0A087WT02 112 aa12.46□□□□□ -0.41
LDLR-206ENST00000557958 PF4P02776 101 aa12.46□□□□□ -0.41
LDLR-206ENST00000557958 CMC4P56277 68 aaPredicted RBP12.46□□□□□ -0.41
LDLR-206ENST00000557958 Q6ZN92 141 aa12.46□□□□□ -0.41
LDLR-206ENST00000557958 MRPS16Q9Y3D3 137 aaKnown RBP12.46□□□□□ -0.41
LDLR-206ENST00000557958 TRGV11A0A075B6L2 103 aa12.46□□□□□ -0.42
LDLR-206ENST00000557958 SMIM17P0DL12 118 aa12.46□□□□□ -0.42
LDLR-206ENST00000557958 BATFQ16520 125 aa12.46□□□□□ -0.42
LDLR-206ENST00000557958 SYT8Q8NBV8 401 aa12.46□□□□□ -0.42
LDLR-206ENST00000557958 OR2K2Q8NGT1 345 aa12.46□□□□□ -0.42
LDLR-206ENST00000557958 MAP1LC3CQ9BXW4 147 aa12.46□□□□□ -0.42
LDLR-206ENST00000557958 ZNF256Q9Y2P7 627 aaPredicted RBP12.46□□□□□ -0.42
LDLR-206ENST00000557958 CLUHP3Q96NS8 147 aa12.45□□□□□ -0.42
LDLR-206ENST00000557958 CRXO43186 299 aaPredicted RBP12.44□□□□□ -0.42
LDLR-206ENST00000557958 PPP1R17O96001 155 aa12.44□□□□□ -0.42
LDLR-206ENST00000557958 IGHV3-16A0A0C4DH30 117 aa12.44□□□□□ -0.42
LDLR-206ENST00000557958 SAP30O75446 220 aa12.44□□□□□ -0.42
LDLR-206ENST00000557958 OR11H12B2RN74 326 aa12.43□□□□□ -0.42
LDLR-206ENST00000557958 HBDP02042 147 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms