RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 A0A087WW49 117 aa10.15□□□□□ -0.79
SHMT2-222ENST00000555774 GNRH2O43555 120 aa10.15□□□□□ -0.79
SHMT2-222ENST00000555774 DEFB1P60022 68 aa10.15□□□□□ -0.79
SHMT2-222ENST00000555774 RNF151Q2KHN1 245 aa10.15□□□□□ -0.79
SHMT2-222ENST00000555774 SAMD5Q5TGI4 173 aa10.15□□□□□ -0.79
SHMT2-222ENST00000555774 C2orf66Q6UXQ4 117 aa10.14□□□□□ -0.79
SHMT2-222ENST00000555774 OR11H12B2RN74 326 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 FAM159AQ6UWV7 190 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 Q6ZS46 218 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 MAPKAPK5-AS1Q8N8E1 139 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 OR11H1Q8NG94 326 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 OR11H2Q8NH07 326 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 DCANP1Q8TF63 244 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 PHLDA1Q8WV24 401 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-222ENST00000555774 KIF25-AS1Q9Y6Z4 181 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 ABCA2Q9BZC7 2435 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 BAALCQ8WXS3 180 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 COL6A6A6NMZ7 2263 aa10.13□□□□□ -0.79
SHMT2-222ENST00000555774 PSMB8P28062 276 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 CSTL1Q9H114 145 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 IGKV3-7A0A075B6H7 116 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 MYMXA0A1B0GTQ4 84 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 LINC00315P59091 139 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 LCNL1Q6ZST4 164 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 NAA38Q9BRA0 125 aaKnown RBP10.12□□□□□ -0.79
SHMT2-222ENST00000555774 VPS25Q9BRG1 176 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 MED13LQ71F56 2210 aa10.12□□□□□ -0.79
SHMT2-222ENST00000555774 SPTBN1Q01082 2364 aaKnown RBP10.11□□□□□ -0.79
SHMT2-222ENST00000555774 E9PLD3 99 aa10.11□□□□□ -0.79
SHMT2-222ENST00000555774 SPRY2O43597 315 aa10.11□□□□□ -0.79
SHMT2-222ENST00000555774 NEGR1Q7Z3B1 354 aa10.11□□□□□ -0.79
SHMT2-222ENST00000555774 NHP2Q9NX24 153 aaKnown RBP10.11□□□□□ -0.79
SHMT2-222ENST00000555774 CYSLTR1Q9Y271 337 aa10.11□□□□□ -0.79
SHMT2-222ENST00000555774 PAPPA-AS1Q5QFB9 102 aa10.1□□□□□ -0.79
SHMT2-222ENST00000555774 TRBV7-3A0A075B6L6 115 aa10.1□□□□□ -0.79
SHMT2-222ENST00000555774 PRSS29PA6NIE9 313 aa10.1□□□□□ -0.79
SHMT2-222ENST00000555774 AVPP01185 164 aa10.1□□□□□ -0.79
SHMT2-222ENST00000555774 HIST1H4GQ99525 98 aa10.1□□□□□ -0.79
SHMT2-222ENST00000555774 CSMD1Q96PZ7 3565 aa10.09□□□□□ -0.79
SHMT2-222ENST00000555774 VCYO14598 125 aa10.09□□□□□ -0.79
SHMT2-222ENST00000555774 POLR2KP53803 58 aaKnown RBP10.09□□□□□ -0.79
SHMT2-222ENST00000555774 TMEM141Q96I45 108 aa10.09□□□□□ -0.79
SHMT2-222ENST00000555774 TRBV6-5A0A0K0K1A5 114 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 J3QLI3 93 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 K7ERJ3 54 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 SRD5A1P18405 259 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 SNRPD3P62318 126 aaKnown RBP10.08□□□□□ -0.8
SHMT2-222ENST00000555774 SUMO4Q6EEV6 95 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 C9orf85Q96MD7 179 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 A0A1B0GWB2 263 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 LGALS9O00182 355 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 CD7P09564 240 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 C12orf74Q32Q52 190 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 LINC01356Q8N9X3 169 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 SYT8Q8NBV8 401 aa10.08□□□□□ -0.8
SHMT2-222ENST00000555774 IGLL5B9A064 214 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 RIPPLY3P57055 190 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 ZFP2Q6ZN57 461 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 TIMM17AQ99595 171 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 KIR2DL4Q99706 377 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 A0A0J9YX75 114 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 EDN2P20800 178 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 C21orf62-AS1Q17RA5 79 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 DEFB112Q30KQ8 113 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 PRADC1Q9BSG0 188 aa10.07□□□□□ -0.8
SHMT2-222ENST00000555774 TRAV12-3A0A0B4J271 114 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 IGHV3-16A0A0C4DH30 117 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 IGIPA6NJ69 53 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 G3V4G9 280 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 K7EQG2 157 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 IGHV4-59P01825 116 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 LGALS1P09382 135 aaKnown RBP10.06□□□□□ -0.8
SHMT2-222ENST00000555774 HERVK_113P61574 105 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 TMEM95Q3KNT9 176 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 RNF152Q8N8N0 203 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 TP53TG1Q9Y2A0 90 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 CACNA1BQ00975 2339 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 TRBV27A0A0K0K1C4 114 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 DUSP14O95147 198 aaKnown RBP10.06□□□□□ -0.8
SHMT2-222ENST00000555774 PMVKQ15126 192 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 ZNF479Q96JC4 524 aa10.06□□□□□ -0.8
SHMT2-222ENST00000555774 SAP30O75446 220 aa10.05□□□□□ -0.8
SHMT2-222ENST00000555774 CRYGDP07320 174 aa10.05□□□□□ -0.8
SHMT2-222ENST00000555774 ZNF688P0C7X2 276 aa10.05□□□□□ -0.8
SHMT2-222ENST00000555774 FOXI2Q6ZQN5 318 aa10.05□□□□□ -0.8
SHMT2-222ENST00000555774 SDHAF1A6NFY7 115 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 F5H697 171 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 TSHBP01222 138 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 ELANEP08246 267 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 COX6B1P14854 86 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 IGLV4-69A0A075B6H9 119 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 IGHV1OR15-1A0A075B7D0 117 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 TMEM238LA0A1B0GVL6 79 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 A6NJY4 79 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 ZNF815PA8K554 130 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 SCGB2A2Q13296 93 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 COTL1Q14019 142 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 RHOHQ15669 191 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 RRN3P1Q2M238 152 aa10.04□□□□□ -0.8
SHMT2-222ENST00000555774 JPT2Q9H910 190 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms