RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CTRLP40313 264 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 SFTA2Q6UW10 78 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 OR11H1Q8NG94 326 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 TMEM190Q8WZ59 177 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 SMIM12Q96EX1 92 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 RNF185Q96GF1 192 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 UBE2E2Q96LR5 201 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 YAE1D1Q9NRH1 226 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 A0A096LNJ9 63 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 IGLC6P0CF74 106 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 SMIM17P0DL12 118 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 HOXD3P31249 432 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-215ENST00000552823 ASIPP42127 132 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 RPS20P60866 119 aaKnown RBP4.22□□□□□ -1.73
LIMA1-215ENST00000552823 TCTEX1D4Q5JR98 221 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 COL5A1-AS1Q5SY13 56 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 C9orf139Q6ZV77 190 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 MS4A6AQ9H2W1 248 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 MDFICQ9P1T7 246 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 FAM231BA6NCW3 169 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 PTTG1IPP53801 180 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 ZNF56Q15929 161 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 KLHL30-AS1Q8NEE0 82 aa4.22□□□□□ -1.73
LIMA1-215ENST00000552823 IGHV3-64A0A075B6Q5 118 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 TRAV21A0A0B4J279 112 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 IGHV3-16A0A0C4DH30 117 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 IGHV4-31P0DP07 118 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 RIPPLY3P57055 190 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 COTL1Q14019 142 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 ZNF575Q86XF7 245 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 ZFAND2AQ8N6M9 145 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 DYNLRB2Q8TF09 96 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 USMG5Q96IX5 58 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 JMJD8Q96S16 334 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 SLC25A16P16260 332 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 GCSHP23434 173 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 ID1P41134 155 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 DEFB113Q30KQ7 82 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 DNLZQ5SXM8 178 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 Q6AWC8 147 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 MYOZ3Q8TDC0 251 aa4.21□□□□□ -1.74
LIMA1-215ENST00000552823 M0QZK8 103 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 RNF151Q2KHN1 245 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 RNASE13Q5GAN3 156 aaKnown RBP4.2□□□□□ -1.74
LIMA1-215ENST00000552823 PET117Q6UWS5 81 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 OPRPNQ99935 248 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-215ENST00000552823 MRPL35Q9NZE8 188 aaKnown RBP4.2□□□□□ -1.74
LIMA1-215ENST00000552823 OVOL1O14753 267 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 IGHV3-53P01767 116 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 P0DMU3 169 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 FAM231AP0DMU4 169 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 FAM231CP0DMU5 169 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 PROK1P58294 105 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 NSUN5P1Q3KNT7 163 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 CSTL1Q9H114 145 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 XCL2Q9UBD3 114 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 IGKV2D-26A0A0A0MRZ7 120 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 SNRPD3P62318 126 aaKnown RBP4.2□□□□□ -1.74
LIMA1-215ENST00000552823 RPL39P62891 51 aaKnown RBP4.2□□□□□ -1.74
LIMA1-215ENST00000552823 SCGB2A2Q13296 93 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 LINC01559Q495D7 138 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 SCGB3A1Q96QR1 104 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 VPREB3Q9UKI3 123 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 U3KQE9 123 aa4.2□□□□□ -1.74
LIMA1-215ENST00000552823 IGHV3-38A0A0C4DH36 116 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 CD5LO43866 347 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 CD300EQ496F6 205 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-215ENST00000552823 C9orf47Q6ZRZ4 202 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 NOTCH1P46531 2555 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 MAST4O15021 2626 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 CFHR3Q02985 330 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 AMMECR1LQ6DCA0 310 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 GATD1Q8NB37 220 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 DLX4Q92988 240 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-215ENST00000552823 CLUHP3Q96NS8 147 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 AP1S3Q96PC3 154 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 NBEAL1Q6ZS30 2694 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 TRBV6-1A0A0K0K1D8 114 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 A0A1B0GW15 77 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 DLEU1O43261 78 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 IGLV1-40P01703 118 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 PSMB8P28062 276 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 LAGE3Q14657 143 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 ZNF876PQ49A33 203 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 LBHQ53QV2 105 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-215ENST00000552823 ZNF493Q6ZR52 646 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 TMEM61Q8N0U2 210 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 Q8N1Y9 231 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 PHLDA1Q8WV24 401 aaPredicted RBP4.19□□□□□ -1.74
LIMA1-215ENST00000552823 Q9UF83 564 aa4.19□□□□□ -1.74
LIMA1-215ENST00000552823 K7ERJ3 54 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 RNASE3P12724 160 aaKnown RBP4.18□□□□□ -1.74
LIMA1-215ENST00000552823 LINC01545Q5VT33 79 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 MTURNQ8N3F0 131 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 LINC01587Q99440 93 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 WFDC10AQ9H1F0 79 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 ZNF702PQ9H963 129 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 STAB1Q9NY15 2570 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 DUSP14O95147 198 aaKnown RBP4.18□□□□□ -1.74
LIMA1-215ENST00000552823 RPL35AP18077 110 aaKnown RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms