RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CEP192Q8TEP8 1941 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 TRGV4A0A0C4DH28 118 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 CD28P10747 220 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 BPESC1Q9GZL8 116 aa11.13□□□□□ -0.63
LIMS1-215ENST00000544547 VPS13AQ96RL7 3174 aa11.12□□□□□ -0.63
LIMS1-215ENST00000544547 LOXP28300 417 aaPredicted RBP11.12□□□□□ -0.63
LIMS1-215ENST00000544547 E7EQL1 145 aa11.12□□□□□ -0.63
LIMS1-215ENST00000544547 IGHV3-73A0A0B4J1V6 119 aa11.12□□□□□ -0.63
LIMS1-215ENST00000544547 Q71RC1 249 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-215ENST00000544547 RPL39LQ96EH5 51 aaKnown RBP11.11□□□□□ -0.63
LIMS1-215ENST00000544547 ZNF876PQ49A33 203 aa11.11□□□□□ -0.63
LIMS1-215ENST00000544547 ZNF625Q96I27 306 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-215ENST00000544547 DKK4Q9UBT3 224 aa11.11□□□□□ -0.63
LIMS1-215ENST00000544547 GATA4P43694 442 aa11.11□□□□□ -0.63
LIMS1-215ENST00000544547 PRR30Q53SZ7 412 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-215ENST00000544547 FAM215AQ9Y5M1 114 aa11.11□□□□□ -0.63
LIMS1-215ENST00000544547 VCYO14598 125 aa11.11□□□□□ -0.63
LIMS1-215ENST00000544547 IGLV3-9A0A075B6K5 115 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 RS1O15537 224 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 CRIP1P50238 77 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 TRPT1Q86TN4 253 aaKnown RBP11.1□□□□□ -0.63
LIMS1-215ENST00000544547 TM2D2Q9BX73 214 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 NAV2Q8IVL1 2488 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 SHISA9B4DS77 424 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 J3QQQ9 107 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 PMVKQ15126 192 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 M0R1W7 72 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 CFAP161Q6P656 301 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 CHCHD5Q9BSY4 110 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 AGPAT4-IT1Q9H0P7 198 aa11.1□□□□□ -0.63
LIMS1-215ENST00000544547 TRGV11A0A075B6L2 103 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 FCN3O75636 299 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 ZNF80P51504 273 aaPredicted RBP11.09□□□□□ -0.63
LIMS1-215ENST00000544547 C9orf139Q6ZV77 190 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 LHBP01229 141 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 CFC1BP0CG36 223 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 CFC1P0CG37 223 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 DSCR9P59020 149 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 NSUN5P1Q3KNT7 163 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 PRAC2D3DTV9 90 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 LGALS1P09382 135 aaKnown RBP11.09□□□□□ -0.63
LIMS1-215ENST00000544547 SAA4P35542 130 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 A4D1N5 150 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 XGP55808 180 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 ZNF493Q6ZR52 646 aa11.09□□□□□ -0.63
LIMS1-215ENST00000544547 K7EIM0 57 aa11.08□□□□□ -0.64
LIMS1-215ENST00000544547 GAS8-AS1O95177 125 aa11.08□□□□□ -0.64
LIMS1-215ENST00000544547 I3L2K1 104 aa11.08□□□□□ -0.64
LIMS1-215ENST00000544547 TCL1BO95988 128 aa11.08□□□□□ -0.64
LIMS1-215ENST00000544547 NCKAP5O14513 1909 aa11.08□□□□□ -0.64
LIMS1-215ENST00000544547 MYCNOSP40205 109 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 PIP4P2Q8N4L2 257 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 PLEKHB2Q96CS7 222 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 SPATA25Q9BR10 227 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 PRSS33Q8NF86 280 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 CTSZQ9UBR2 303 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 SDHAF1A6NFY7 115 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 IGLV2-23P01705 113 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 CGB3P0DN86 165 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 CGB7P0DN87 165 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 IGF2RP11717 2491 aa11.07□□□□□ -0.64
LIMS1-215ENST00000544547 CARD19Q96LW7 228 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 MSRB2Q9Y3D2 182 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 TIMM21Q9BVV7 248 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 RHPN1-AS1Q9BWJ2 59 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 MALP21145 153 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 GAGE2AQ6NT46 116 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 LINC00311Q8N616 119 aa11.06□□□□□ -0.64
LIMS1-215ENST00000544547 OVOL3O00110 214 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 SEM1Q6ZVN7 128 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 TMEM190Q8WZ59 177 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 TRBV7-1A0A0A6YYK4 115 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 G3V318 75 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 RUSC1-AS1Q66K80 236 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 LINC00477Q96M19 166 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 CR1LQ2VPA4 569 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 PLA2G2CQ5R387 149 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 EYSQ5T1H1 3165 aa11.05□□□□□ -0.64
LIMS1-215ENST00000544547 K7ENP7 123 aa11.04□□□□□ -0.64
LIMS1-215ENST00000544547 RNASE13Q5GAN3 156 aaKnown RBP11.04□□□□□ -0.64
LIMS1-215ENST00000544547 EXPH5Q8NEV8 1989 aa11.04□□□□□ -0.64
LIMS1-215ENST00000544547 CRYGCP07315 174 aa11.04□□□□□ -0.64
LIMS1-215ENST00000544547 MRPL23Q16540 153 aaKnown RBP11.04□□□□□ -0.64
LIMS1-215ENST00000544547 GNRH2O43555 120 aa11.04□□□□□ -0.64
LIMS1-215ENST00000544547 TRGV1A0A0A0MS02 117 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 IGLV2-11P01706 119 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 USMG5Q96IX5 58 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 TET2Q6N021 2002 aaPredicted RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 RPL39P62891 51 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 C22orf34Q6ZV56 151 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 RBMY1BA6NDE4 496 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 RBMY1EA6NEQ0 496 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 RBMY1DP0C7P1 496 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 RBMY1A1P0DJD3 496 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 RBMY1CP0DJD4 496 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 NDUFV3P56181 108 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 HIST1H4AP62805 103 aaKnown RBP11.03□□□□□ -0.64
LIMS1-215ENST00000544547 UBE2E2Q96LR5 201 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 MYO15AQ9UKN7 3530 aa11.03□□□□□ -0.64
LIMS1-215ENST00000544547 C11orf86A6NJI1 115 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms