RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SMKR1H3BMG3 65 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 H3BVH4 76 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 EVI2AP22794 236 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 S100A4P26447 101 aaKnown RBP7.41□□□□□ -1.22
SS18-205ENST00000542420 ANXA2RQ3ZCQ2 193 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 OR9G4Q8NGQ1 327 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 RNF223E7ERA6 249 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 PRB4P10163 310 aaPredicted RBP7.41□□□□□ -1.22
SS18-205ENST00000542420 CKS1BP61024 79 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 RPL11P62913 178 aaKnown RBP7.41□□□□□ -1.22
SS18-205ENST00000542420 NRGNQ92686 78 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 SPATA25Q9BR10 227 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 SMIM2Q9BVW6 85 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 PHLDA3Q9Y5J5 127 aa7.41□□□□□ -1.22
SS18-205ENST00000542420 IGHV4OR15-8A0A075B7B6 117 aa7.4□□□□□ -1.22
SS18-205ENST00000542420 A0A087WW49 117 aa7.4□□□□□ -1.22
SS18-205ENST00000542420 A8MTW9 85 aa7.4□□□□□ -1.22
SS18-205ENST00000542420 PGPEP1Q9NXJ5 209 aa7.4□□□□□ -1.22
SS18-205ENST00000542420 TRAV12-1A0A0B4J245 112 aa7.4□□□□□ -1.23
SS18-205ENST00000542420 A0A0J9YX75 114 aa7.4□□□□□ -1.23
SS18-205ENST00000542420 H3BUT2 72 aa7.4□□□□□ -1.23
SS18-205ENST00000542420 FGF6P10767 208 aa7.4□□□□□ -1.23
SS18-205ENST00000542420 FOXI2Q6ZQN5 318 aa7.4□□□□□ -1.23
SS18-205ENST00000542420 OR5A1Q8NGJ0 315 aa7.4□□□□□ -1.23
SS18-205ENST00000542420 NAA38Q9BRA0 125 aaKnown RBP7.4□□□□□ -1.23
SS18-205ENST00000542420 RELNP78509 3460 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 IGSF10Q6WRI0 2623 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 GAGE12HA6NDE8 117 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 TSPAN13O95857 204 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 RNASE3P12724 160 aaKnown RBP7.39□□□□□ -1.23
SS18-205ENST00000542420 RNASE4P34096 147 aaKnown RBP7.39□□□□□ -1.23
SS18-205ENST00000542420 CD300EQ496F6 205 aaPredicted RBP7.39□□□□□ -1.23
SS18-205ENST00000542420 TMEM97Q5BJF2 176 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 FAM159AQ6UWV7 190 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 BOD1L2Q8IYS8 172 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 PRB1P04280 392 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 ODF1Q14990 250 aa7.39□□□□□ -1.23
SS18-205ENST00000542420 TSSC4Q9Y5U2 329 aaPredicted RBP7.39□□□□□ -1.23
SS18-205ENST00000542420 SUMO2P61956 95 aaKnown RBP7.38□□□□□ -1.23
SS18-205ENST00000542420 LCNL1Q6ZST4 164 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 TMEM158Q8WZ71 300 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 C9orf85Q96MD7 179 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 PEMTQ9UBM1 199 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 SPTAN1Q13813 2472 aaKnown RBP7.38□□□□□ -1.23
SS18-205ENST00000542420 A0A1W2PPM0 123 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 HOXA3O43365 443 aaPredicted RBP7.38□□□□□ -1.23
SS18-205ENST00000542420 PIK3CD-AS1Q5SR53 167 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 KRTAP1-3Q8IUG1 177 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 SYT8Q8NBV8 401 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 C4orf3Q8WVX3 66 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 ZNF479Q96JC4 524 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 KIF25-AS1Q9Y6Z4 181 aa7.38□□□□□ -1.23
SS18-205ENST00000542420 USP9XQ93008 2570 aaPredicted RBP7.37□□□□□ -1.23
SS18-205ENST00000542420 ACACBO00763 2458 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 TRBV6-5A0A0K0K1A5 114 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 DPM2O94777 84 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 HOXD3P31249 432 aaPredicted RBP7.37□□□□□ -1.23
SS18-205ENST00000542420 RASL10AQ92737 203 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 TOMM6Q96B49 74 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 HIGD1BQ9P298 99 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 SPCS1Q9Y6A9 102 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 TACC2O95359 2948 aa7.37□□□□□ -1.23
SS18-205ENST00000542420 IGKCP01834 107 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 PTH2Q96A98 100 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 EDA2RQ9HAV5 297 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 ANKRD17O75179 2603 aaKnown RBP7.36□□□□□ -1.23
SS18-205ENST00000542420 TRGV11A0A075B6L2 103 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 A0A087WX48 190 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 F6UB75 175 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 LINC01619G3V211 115 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 H0Y8G0 127 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 GAS8-AS1O95177 125 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 PLNP26678 52 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 SHISA2Q6UWI4 295 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 Q96MF0 132 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 LINC00467Q9BRT7 94 aa7.36□□□□□ -1.23
SS18-205ENST00000542420 MCRIP2Q9BUT9 160 aaKnown RBP7.36□□□□□ -1.23
SS18-205ENST00000542420 TIMM8BQ9Y5J9 83 aaPredicted RBP7.36□□□□□ -1.23
SS18-205ENST00000542420 GATA1P15976 413 aaPredicted RBP7.35□□□□□ -1.23
SS18-205ENST00000542420 LINC00315P59091 139 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 GEMIN7Q9H840 131 aaKnown RBP7.35□□□□□ -1.23
SS18-205ENST00000542420 SPANXB1Q9NS25 103 aaPredicted RBP7.35□□□□□ -1.23
SS18-205ENST00000542420 CFAP46Q8IYW2 2715 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 IGHV3-16A0A0C4DH30 117 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.35□□□□□ -1.23
SS18-205ENST00000542420 PRSS1P07477 247 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 SYNJ2BPP57105 145 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 RPL24P83731 157 aaKnown RBP7.35□□□□□ -1.23
SS18-205ENST00000542420 Q6ZQT7 251 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 C18orf15Q96N68 181 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 ZNF256Q9Y2P7 627 aaPredicted RBP7.35□□□□□ -1.23
SS18-205ENST00000542420 USP24Q9UPU5 2620 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 MUC4Q99102 2169 aa7.35□□□□□ -1.23
SS18-205ENST00000542420 IGHV1OR15-1A0A075B7D0 117 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 TRAV25A0A0B4J276 109 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 A1L4Q6 167 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 A6NDN8 102 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 KRTAP10-9P60411 292 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 ADAMTSL5Q6ZMM2 481 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 HHLA3Q9XRX5 114 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms