RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 HIST1H2BOP23527 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BBP33778 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 APOC4P55056 127 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BDP58876 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BCP62807 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 SLAQ13239 276 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST2H2BEQ16778 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.39□□□□□ -1.55
VPS53-205ENST00000541903 ZNF493Q6ZR52 646 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 C1orf158Q8N1D5 194 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BHQ93079 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 AP1S3Q96PC3 154 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 MDFIQ99750 246 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BNQ99877 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 HIST1H2BMQ99879 126 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 TMEM191AQ9H0A3 160 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 CSTL1Q9H114 145 aa5.39□□□□□ -1.55
VPS53-205ENST00000541903 KIR2DL5BA0A0G2JN68 375 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 KIR2DL5BA0A0G2JPC4 375 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 NXPH4O95158 308 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 GIG44P09565 113 aaPredicted RBP5.38□□□□□ -1.55
VPS53-205ENST00000541903 SRIP30626 198 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 NDUFA6P56556 154 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 EGFEM1PQ0D2K5 195 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 KIAA1644Q3SXP7 199 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 KIR2DL5AQ8N109 375 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 KIR2DL5BQ8NHK3 375 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 MSRB1Q9NZV6 116 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 MDFICQ9P1T7 246 aa5.38□□□□□ -1.55
VPS53-205ENST00000541903 SPRY2O43597 315 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 SMIM17P0DL12 118 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 EVI2AP22794 236 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 RIPPLY3P57055 190 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 KRTAP10-11P60412 298 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 FAM104BQ5XKR9 115 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 AMN1Q8IY45 258 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 RCHY1Q96PM5 261 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 SPXQ9BT56 116 aa5.37□□□□□ -1.55
VPS53-205ENST00000541903 G3V4G9 280 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 M0R2P5 195 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 UBE2CO00762 179 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 PPBPP02775 128 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 MGPP08493 103 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 IGHV4-30-4P0DP06 118 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 RRN3P1Q2M238 152 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 OR10J3Q5JRS4 329 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 SAMD5Q5TGI4 173 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 DMRTA1Q5VZB9 504 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 ZNF705AQ6ZN79 300 aaPredicted RBP5.36□□□□□ -1.55
VPS53-205ENST00000541903 BAGE3Q86Y29 109 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 ORMDL3Q8N138 153 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 C14orf178Q8N769 122 aaPredicted RBP5.36□□□□□ -1.55
VPS53-205ENST00000541903 C11orf72Q8NBR9 251 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 CSNK1G2-AS1Q8NCQ2 148 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 TMEM263Q8WUH6 116 aaKnown RBP5.36□□□□□ -1.55
VPS53-205ENST00000541903 C16orf74Q96GX8 76 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 ALKBH7Q9BT30 221 aaPredicted RBP5.36□□□□□ -1.55
VPS53-205ENST00000541903 DPH3P1Q9H4G8 78 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 GSN-AS1Q9NRJ2 163 aa5.36□□□□□ -1.55
VPS53-205ENST00000541903 SORL1Q92673 2214 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 AGRNO00468 2067 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 D6R8Y8 96 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 RAB4AP20338 218 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 CKS2P33552 79 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 SNRPEP62304 92 aaKnown RBP5.35□□□□□ -1.55
VPS53-205ENST00000541903 Q0VG73 95 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 ZNF876PQ49A33 203 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 MRPL51Q4U2R6 128 aaKnown RBP5.35□□□□□ -1.55
VPS53-205ENST00000541903 RNASE8Q8TDE3 154 aaKnown RBP5.35□□□□□ -1.55
VPS53-205ENST00000541903 PTH2Q96A98 100 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 MRAP2Q96G30 205 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 RNF185Q96GF1 192 aa5.35□□□□□ -1.55
VPS53-205ENST00000541903 NIPBLQ6KC79 2804 aaeCLIP5.34□□□□□ -1.55
VPS53-205ENST00000541903 A0A087WWL8 130 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 SMIM9A6NGZ8 99 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 A8MWV9 139 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 A8MZ25 164 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 NCR2O95944 276 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 PRM2P04554 102 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 AZU1P20160 251 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 IQCJQ1A5X6 159 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 DEFB135Q30KP9 77 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 COA6Q5JTJ3 125 aaKnown RBP5.34□□□□□ -1.55
VPS53-205ENST00000541903 PIK3CD-AS1Q5SR53 167 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 FAM74A4Q5TZK3 123 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 IL17DQ8TAD2 202 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 C18orf32Q8TCD1 76 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 PRELID3AQ96N28 172 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 NDUFAF3Q9BU61 184 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 MRPL16Q9NX20 251 aaKnown RBP5.34□□□□□ -1.55
VPS53-205ENST00000541903 LAMTOR2Q9Y2Q5 125 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 U3KQK5 164 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 TENM1Q9UKZ4 2725 aa5.34□□□□□ -1.55
VPS53-205ENST00000541903 NOTCH3Q9UM47 2321 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 TRGV1A0A0A0MS02 117 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 C5orf52A6NGY3 159 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 F5H697 171 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 SMKR1H3BMG3 65 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 RHODO00212 210 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 SERF1AO75920 110 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms