RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 CYTL1Q9NRR1 136 aa2.92□□□□□ -1.94
PRKDC-209ENST00000540819 TMEM106BQ9NUM4 274 aa2.92□□□□□ -1.94
PRKDC-209ENST00000540819 SHROOM3Q8TF72 1996 aa2.92□□□□□ -1.94
PRKDC-209ENST00000540819 RTEL1-TNFRSF6BF6WH68 1400 aa2.92□□□□□ -1.94
PRKDC-209ENST00000540819 LAMB4A4D0S4 1761 aa2.92□□□□□ -1.94
PRKDC-209ENST00000540819 LRP5O75197 1615 aa2.91□□□□□ -1.94
PRKDC-209ENST00000540819 CC2D2AQ9P2K1 1620 aa2.91□□□□□ -1.94
PRKDC-209ENST00000540819 UBE2L5PA0A1B0GUS4 154 aa2.91□□□□□ -1.94
PRKDC-209ENST00000540819 IGHV3-33P01772 117 aa2.91□□□□□ -1.94
PRKDC-209ENST00000540819 POLR2JP52435 117 aaKnown RBP2.91□□□□□ -1.94
PRKDC-209ENST00000540819 UBE2L3P68036 154 aaKnown RBP2.91□□□□□ -1.94
PRKDC-209ENST00000540819 VAMP8Q9BV40 100 aa2.91□□□□□ -1.94
PRKDC-209ENST00000540819 LAMB1P07942 1786 aa2.91□□□□□ -1.94
PRKDC-209ENST00000540819 KDM5AP29375 1690 aaKnown RBP2.91□□□□□ -1.94
PRKDC-209ENST00000540819 GAPVD1Q14C86 1478 aa2.9□□□□□ -1.94
PRKDC-209ENST00000540819 ZFHX2Q9C0A1 2572 aaPredicted RBP2.9□□□□□ -1.94
PRKDC-209ENST00000540819 ADAMTS7Q9UKP4 1686 aa2.9□□□□□ -1.95
PRKDC-209ENST00000540819 IGKV2-24A0A0C4DH68 120 aa2.9□□□□□ -1.95
PRKDC-209ENST00000540819 A0A1W2PNN7 141 aa2.9□□□□□ -1.95
PRKDC-209ENST00000540819 COX7CP15954 63 aa2.9□□□□□ -1.95
PRKDC-209ENST00000540819 INSL4Q14641 139 aa2.9□□□□□ -1.95
PRKDC-209ENST00000540819 RHOHQ15669 191 aa2.9□□□□□ -1.95
PRKDC-209ENST00000540819 DISP1Q96F81 1524 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 TRAV17A0A0B4J275 112 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 CBLN1P23435 193 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 CPSF1Q10570 1443 aaKnown RBP2.89□□□□□ -1.95
PRKDC-209ENST00000540819 SLC48A1Q6P1K1 146 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 C10orf71Q711Q0 1435 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 TVP23CQ96ET8 276 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 BRWD1Q9NSI6 2320 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 LINC00312Q9Y6C7 94 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 MYH8P13535 1937 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 CEP192Q8TEP8 1941 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 MAGI1Q96QZ7 1491 aaPredicted RBP2.89□□□□□ -1.95
PRKDC-209ENST00000540819 ARHGAP35Q9NRY4 1499 aa2.89□□□□□ -1.95
PRKDC-209ENST00000540819 SNRNP200O75643 2136 aaKnown RBP2.89□□□□□ -1.95
PRKDC-209ENST00000540819 RBAKDNA6NC62 111 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 A6NIN4 97 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 SLC25A6P12236 298 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 RPL7L1Q6DKI1 246 aaKnown RBP2.88□□□□□ -1.95
PRKDC-209ENST00000540819 IGFL1Q6UW32 110 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 SPACA4Q8TDM5 124 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 LINC00052Q96N35 136 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 ORMDL1Q9P0S3 153 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 LTBP2Q14767 1821 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 WNK3Q9BYP7 1800 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 MYOFQ9NZM1 2061 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 COL4A2P08572 1712 aa2.88□□□□□ -1.95
PRKDC-209ENST00000540819 RTTNQ86VV8 2226 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 F8W1H4 67 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 MT-ATP8P03928 68 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 IGLC1P0CG04 106 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 UBE2G1P62253 170 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 RBM3P98179 157 aaKnown RBP2.87□□□□□ -1.95
PRKDC-209ENST00000540819 C9orf116Q5BN46 136 aaPredicted RBP2.87□□□□□ -1.95
PRKDC-209ENST00000540819 PYY3Q5JQD4 70 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 S100A7L2Q5SY68 101 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 UNQ5815/PRO19632Q6UWF5 114 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 COMMD6Q7Z4G1 85 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 ATG5Q9H1Y0 275 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 IFT140Q96RY7 1462 aa2.87□□□□□ -1.95
PRKDC-209ENST00000540819 PTPRMP28827 1452 aa2.86□□□□□ -1.95
PRKDC-209ENST00000540819 Q0VG73 95 aa2.86□□□□□ -1.95
PRKDC-209ENST00000540819 LCN9Q8WX39 176 aa2.86□□□□□ -1.95
PRKDC-209ENST00000540819 PATE1Q8WXA2 126 aa2.86□□□□□ -1.95
PRKDC-209ENST00000540819 ADGRB3O60242 1522 aa2.86□□□□□ -1.95
PRKDC-209ENST00000540819 COL1A2P08123 1366 aa2.86□□□□□ -1.95
PRKDC-209ENST00000540819 CASKIN1Q8WXD9 1431 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 CHD3Q12873 2000 aaKnown RBP2.85□□□□□ -1.95
PRKDC-209ENST00000540819 MUC22E2RYF6 1773 aaPredicted RBP2.85□□□□□ -1.95
PRKDC-209ENST00000540819 IGKV1D-17A0A075B6S4 117 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 CXorf51AA0A1B0GTR3 108 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 TMEM30CPA0ZSE6 113 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 CCL16O15467 120 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 SNCAP37840 140 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 SPRNQ5BIV9 151 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 NDUFA11Q86Y39 141 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 CASP8AP2Q9UKL3 1982 aa2.85□□□□□ -1.95
PRKDC-209ENST00000540819 PRRC2AP48634 2157 aaKnown RBP2.84□□□□□ -1.95
PRKDC-209ENST00000540819 PCDH15Q96QU1 1955 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 TRBV6-8A0A0A6YYG3 113 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 SDHAF1A6NFY7 115 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 H3BRN7 92 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 LINC00167Q96N53 147 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 PRO1933Q9H354 126 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 MRPL35Q9NZE8 188 aaKnown RBP2.84□□□□□ -1.95
PRKDC-209ENST00000540819 C22orf24Q9Y442 160 aa2.84□□□□□ -1.95
PRKDC-209ENST00000540819 PATJQ8NI35 1801 aa2.84□□□□□ -1.96
PRKDC-209ENST00000540819 ABCC5O15440 1437 aa2.84□□□□□ -1.96
PRKDC-209ENST00000540819 ABCC3O15438 1527 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 TNRC6AQ8NDV7 1962 aaKnown RBP2.83□□□□□ -1.96
PRKDC-209ENST00000540819 KDM6BO15054 1643 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 TOPAZ1Q8N9V7 1692 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 TRBV10-3A0A0K0K1G6 114 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 IL7P13232 177 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 FAM74A1Q5RGS3 127 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 LYPD5Q6UWN5 251 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 LINC00299Q6ZSB3 139 aa2.83□□□□□ -1.96
PRKDC-209ENST00000540819 SIP14410 1827 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms