RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 GATA1P15976 413 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-238ENST00000540663 S100A4P26447 101 aaKnown RBP8.13□□□□□ -1.11
SYNE1-238ENST00000540663 ASIPP42127 132 aa8.13□□□□□ -1.11
SYNE1-238ENST00000540663 AKR1C3P42330 323 aa8.13□□□□□ -1.11
SYNE1-238ENST00000540663 Q6ZNX1 250 aa8.13□□□□□ -1.11
SYNE1-238ENST00000540663 ZC2HC1AQ96GY0 325 aa8.13□□□□□ -1.11
SYNE1-238ENST00000540663 TRAV1-1A0A0B4J248 108 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 IGKV3D-20A0A0C4DH25 116 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 SIVA1O15304 175 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 NXPH4O95158 308 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 C1QBP02746 253 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 ZNF506Q5JVG8 444 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 DNLZQ5SXM8 178 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 CFAP126Q5VTH2 177 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 LYPD5Q6UWN5 251 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 MANBALQ9NQG1 85 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 IL36BQ9NZH7 164 aa8.12□□□□□ -1.11
SYNE1-238ENST00000540663 PGPEP1LA6NFU8 196 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 A8MWV9 139 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 KRBOX1C9JBD0 128 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 TEX46H3BTG2 121 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 SH2D1AO60880 128 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 TIRAPP58753 221 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 ZNF674Q2M3X9 581 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 SLC51BQ86UW2 128 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 KRTAP1-5Q9BYS1 174 aa8.11□□□□□ -1.11
SYNE1-238ENST00000540663 A0A1B0GV50 99 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 TRBV6-4A0A1B0GX49 114 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 SCO2A0A1W2PP80 73 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 K7EP13 123 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 MGST1P10620 155 aaKnown RBP8.1□□□□□ -1.11
SYNE1-238ENST00000540663 CRIP1P50238 77 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 RHOHQ15669 191 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 LINC01559Q495D7 138 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 ZFP2Q6ZN57 461 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 PRADC1Q9BSG0 188 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 BOLA1Q9Y3E2 137 aa8.1□□□□□ -1.11
SYNE1-238ENST00000540663 TRAV9-2A0A087WT02 112 aa8.09□□□□□ -1.11
SYNE1-238ENST00000540663 SULT1A2P50226 295 aa8.09□□□□□ -1.11
SYNE1-238ENST00000540663 AKAP14Q86UN6 197 aa8.09□□□□□ -1.11
SYNE1-238ENST00000540663 SLC25A29Q8N8R3 303 aa8.09□□□□□ -1.11
SYNE1-238ENST00000540663 NHLRC2Q8NBF2 726 aa8.09□□□□□ -1.11
SYNE1-238ENST00000540663 SYT8Q8NBV8 401 aa8.09□□□□□ -1.11
SYNE1-238ENST00000540663 H3BVH4 76 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 M0R036 132 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 RHODO00212 210 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 CXCL1P09341 107 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 TNP2Q05952 138 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 BAGE2Q86Y30 109 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 C11orf52Q96A22 123 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 MLST8Q9BVC4 326 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 PARLQ9H300 379 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 GNG13Q9P2W3 67 aa8.08□□□□□ -1.12
SYNE1-238ENST00000540663 LOC100131303A0A0U1RQF7 123 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 IFNA1P01562 189 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 ARMS2P0C7Q2 107 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 MED14OSP0DP75 135 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 SCRT2Q9NQ03 307 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 PHLDA3Q9Y5J5 127 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 LY96Q9Y6Y9 160 aa8.07□□□□□ -1.12
SYNE1-238ENST00000540663 IGHV3-73A0A0B4J1V6 119 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 GRIFINA4D1Z8 144 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 DNAH10OSP0CZ25 163 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 EVI2AP22794 236 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 LINC00315P59091 139 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 CCL20P78556 96 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 NFE4Q86UQ8 179 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 ZFP82Q8N141 532 aa8.06□□□□□ -1.12
SYNE1-238ENST00000540663 TMSB15BA0A087X1C1 80 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 PDE6DO43924 150 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 TAGLN2P37802 199 aaKnown RBP8.05□□□□□ -1.12
SYNE1-238ENST00000540663 RPL35P42766 123 aaKnown RBP8.05□□□□□ -1.12
SYNE1-238ENST00000540663 DMRTA1Q5VZB9 504 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 UFSP1Q6NVU6 142 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 ZNF575Q86XF7 245 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 WFDC10BQ8IUB3 73 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 C10orf126Q8N4M7 172 aa8.05□□□□□ -1.12
SYNE1-238ENST00000540663 DNAH11Q96DT5 4516 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 hCG_2014768A0A024R1R8 64 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 TRAV8-6A0A0B4J262 113 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 MEF2BQ02080 365 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-238ENST00000540663 C9orf62Q8N4C0 152 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 ATP6V0E2Q8NHE4 81 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 SMIM12Q96EX1 92 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 SFRP2Q96HF1 295 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 GTSF1LQ9H1H1 148 aa8.04□□□□□ -1.12
SYNE1-238ENST00000540663 IGHV3-38A0A0C4DH36 116 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 M0R381 172 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 BCL2P10415 239 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 LINC01556Q5JQF7 62 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 LELP1Q5T871 98 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 Q6ZRN7 208 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-238ENST00000540663 Q6ZSN1 163 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 JPT2Q9H910 190 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 MSRB1Q9NZV6 116 aa8.03□□□□□ -1.12
SYNE1-238ENST00000540663 HERC2O95714 4834 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 CRYGDP07320 174 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 LINC00694P0DN24 101 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 CENPWQ5EE01 88 aa8.02□□□□□ -1.13
SYNE1-238ENST00000540663 OR10J3Q5JRS4 329 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms