RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 FOXC2Q99958 501 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 SMIM2Q9BVW6 85 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 BEX4Q9NWD9 120 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-233ENST00000535896 PDZD2O15018 2839 aa4.85□□□□□ -1.63
SYNE1-233ENST00000535896 CSMD2Q7Z408 3487 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 AKAP9Q99996 3911 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 IGHV1-69DA0A0B4J2H0 117 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 CLPSL1A2RUU4 121 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 E9PLD3 99 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 LYNX1G3V0Z9 82 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 SMKR1H3BMG3 65 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 H7C1H1 209 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 OVOL1O14753 267 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 LYNX1P0DP58 116 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 GCSHP23434 173 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 KLRD1Q13241 179 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 LYRM7Q5U5X0 104 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 FOXI2Q6ZQN5 318 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 APRG1Q8IVJ8 170 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 LRRC75A-AS1Q8N1F1 130 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 POM121L12Q8N7R1 296 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 TOMM6Q96B49 74 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 LINC00477Q96M19 166 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 CCDC140Q96MF4 163 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 AGPAT4-IT1Q9H0P7 198 aa4.84□□□□□ -1.63
SYNE1-233ENST00000535896 ITPR3Q14573 2671 aa4.84□□□□□ -1.64
SYNE1-233ENST00000535896 IGKV2D-26A0A0A0MRZ7 120 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 TRAV8-2A0A0B4J237 113 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 TRAV21A0A0B4J279 112 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 OR11H12B2RN74 326 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 ATP6V0E1O15342 81 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 NXPH4O95158 308 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 FXYD2P54710 66 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 DEFB113Q30KQ7 82 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 C19orf54Q5BKX5 351 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 SPANXN1Q5VSR9 72 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 CLEC2AQ6UVW9 174 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 OR11H1Q8NG94 326 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 OR11H2Q8NH07 326 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 GLMPQ8WWB7 406 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 C18orf15Q96N68 181 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 DPH3P1Q9H4G8 78 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 MSRB1Q9NZV6 116 aa4.83□□□□□ -1.64
SYNE1-233ENST00000535896 FLNAP21333 2647 aaKnown RBP4.83□□□□□ -1.64
SYNE1-233ENST00000535896 PRRC2AP48634 2157 aaKnown RBP4.83□□□□□ -1.64
SYNE1-233ENST00000535896 OTOGQ6ZRI0 2925 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 TRBV7-3A0A075B6L6 115 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 PRAC2D3DTV9 90 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 NDUFA4O00483 81 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 RNASE1P07998 156 aaKnown RBP4.82□□□□□ -1.64
SYNE1-233ENST00000535896 EFNA4P52798 201 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 SUMO2P61956 95 aaKnown RBP4.82□□□□□ -1.64
SYNE1-233ENST00000535896 ATP5G2Q06055 141 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 LCNL1Q6ZST4 164 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 ATP6V0E2Q8NHE4 81 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 NRGNQ92686 78 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 USMG5Q96IX5 58 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 ZNF479Q96JC4 524 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 FAM19A4Q96LR4 140 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 MRPL35Q9NZE8 188 aaKnown RBP4.82□□□□□ -1.64
SYNE1-233ENST00000535896 ZNF580Q9UK33 172 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 MOB4Q9Y3A3 225 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 S4R3C0 116 aa4.82□□□□□ -1.64
SYNE1-233ENST00000535896 IGHV4OR15-8A0A075B7B6 117 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 A0A087WW49 117 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 TRAV40A0A0B4J280 105 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 MYMXA0A1B0GTQ4 84 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 IGLL5B9A064 214 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 SAP30O75446 220 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 TRGV3P03979 118 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 HLA-DMBP28068 263 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 ASIPP42127 132 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 ATP5J2P56134 94 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 PRB3Q04118 309 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-233ENST00000535896 ERCC8Q13216 396 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 FOXE3Q13461 319 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 ECSCRQ19T08 205 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 RRN3P1Q2M238 152 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 GTSCR1Q86UQ5 136 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 C5orf56Q8N8D9 126 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 NEXN-AS1Q8NBZ9 246 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 OR10J6PQ8NGY7 276 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 RAB37Q96AX2 223 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 C16orf92Q96LL3 132 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 SPATA25Q9BR10 227 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 VCX2Q9H322 139 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 NHP2Q9NX24 153 aaKnown RBP4.81□□□□□ -1.64
SYNE1-233ENST00000535896 C11orf21Q9P2W6 132 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 UFC1Q9Y3C8 167 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 VPS13CQ709C8 3753 aa4.81□□□□□ -1.64
SYNE1-233ENST00000535896 TRAV41A0A0B4J266 112 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 TMEM238C9JI98 176 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 SOCS3O14543 225 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 NPFFO15130 113 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 IGHV3-23P01764 117 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 IGF1P05019 195 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 SAA4P35542 130 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 FXYD7P58549 80 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 DSCR9P59020 149 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 HERVK_113P61574 105 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms