RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 TRGV2A0A075B6R0 118 aa8.4□□□□□ -1.06
TRIM3-211ENST00000532542 COX8CQ7Z4L0 72 aa8.4□□□□□ -1.06
TRIM3-211ENST00000532542 TRPT1Q86TN4 253 aaKnown RBP8.4□□□□□ -1.06
TRIM3-211ENST00000532542 ZNF25P17030 456 aaPredicted RBP8.4□□□□□ -1.06
TRIM3-211ENST00000532542 Q71RC1 249 aaPredicted RBP8.4□□□□□ -1.06
TRIM3-211ENST00000532542 MRPL52Q86TS9 123 aaKnown RBP8.4□□□□□ -1.06
TRIM3-211ENST00000532542 TMEM61Q8N0U2 210 aa8.4□□□□□ -1.06
TRIM3-211ENST00000532542 RHODO00212 210 aa8.4□□□□□ -1.06
TRIM3-211ENST00000532542 ZFAND2AQ8N6M9 145 aa8.4□□□□□ -1.06
TRIM3-211ENST00000532542 DLX4Q92988 240 aaPredicted RBP8.4□□□□□ -1.06
TRIM3-211ENST00000532542 MCRIP2Q9BUT9 160 aaKnown RBP8.4□□□□□ -1.06
TRIM3-211ENST00000532542 A8MWV9 139 aa8.4□□□□□ -1.07
TRIM3-211ENST00000532542 FRYQ5TBA9 3013 aa8.4□□□□□ -1.07
TRIM3-211ENST00000532542 TRAV8-6A0A0B4J262 113 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 LGALS9BQ3B8N2 356 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 LGALS9CQ6DKI2 356 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 RNF152Q8N8N0 203 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 CHTOPQ9Y3Y2 248 aaKnown RBP8.39□□□□□ -1.07
TRIM3-211ENST00000532542 K7EMI3 77 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 SRSF9Q13242 221 aaKnown RBP eCLIP8.39□□□□□ -1.07
TRIM3-211ENST00000532542 C19orf54Q5BKX5 351 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 AMMECR1LQ6DCA0 310 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 OR4C5Q8NGB2 326 aa8.39□□□□□ -1.07
TRIM3-211ENST00000532542 KIR2DL5BA0A0G2JN68 375 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 KIR2DL5BA0A0G2JPC4 375 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 SNAI2O43623 268 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 IGLC3P0DOY3 106 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 PLNP26678 52 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 CD300EQ496F6 205 aaPredicted RBP8.38□□□□□ -1.07
TRIM3-211ENST00000532542 KIR2DL5AQ8N109 375 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 CITED2Q99967 270 aaPredicted RBP8.38□□□□□ -1.07
TRIM3-211ENST00000532542 SORL1Q92673 2214 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 TRGV1A0A0A0MS02 117 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 A0A1B0GV90 55 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 GATA1P15976 413 aaPredicted RBP8.38□□□□□ -1.07
TRIM3-211ENST00000532542 RPL35AP18077 110 aaKnown RBP8.38□□□□□ -1.07
TRIM3-211ENST00000532542 TMEM170BQ5T4T1 132 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 IGHV3-73A0A0B4J1V6 119 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 UBE2L6O14933 153 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 SPXQ9BT56 116 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 VCX2Q9H322 139 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 C2orf66Q6UXQ4 117 aa8.38□□□□□ -1.07
TRIM3-211ENST00000532542 SDHAF1A6NFY7 115 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 SPRY2O43597 315 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 CFHR3Q02985 330 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 COTL1Q14019 142 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 ABCA2Q9BZC7 2435 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 TRAV2A0A0B4J234 112 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 LOC400499M0QZD8 3231 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 IGLL1P15814 213 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 APRG1Q8IVJ8 170 aa8.37□□□□□ -1.07
TRIM3-211ENST00000532542 CD28P10747 220 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 GCSHP23434 173 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 Q8N1Y9 231 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 DCANP1Q8TF63 244 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 M0R2P5 195 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 RNASE1P07998 156 aaKnown RBP8.36□□□□□ -1.07
TRIM3-211ENST00000532542 HLA-DRB4P13762 266 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 LGALS3P17931 250 aaKnown RBP8.36□□□□□ -1.07
TRIM3-211ENST00000532542 HLA-DRB4X5D2U9 266 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 USP24Q9UPU5 2620 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 SETD2Q9BYW2 2564 aaPredicted RBP8.36□□□□□ -1.07
TRIM3-211ENST00000532542 MRPS16Q9Y3D3 137 aaKnown RBP8.36□□□□□ -1.07
TRIM3-211ENST00000532542 FASNP49327 2511 aaKnown RBP8.36□□□□□ -1.07
TRIM3-211ENST00000532542 EMP1P54849 157 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 HIST1H4GQ99525 98 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 C2orf88Q9BSF0 95 aa8.36□□□□□ -1.07
TRIM3-211ENST00000532542 GEMIN7Q9H840 131 aaKnown RBP8.36□□□□□ -1.07
TRIM3-211ENST00000532542 ZC2HC1BQ5TFG8 222 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 LINC00173Q6ZV60 143 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 CNFNQ9BYD5 112 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 DEFB114Q30KQ6 69 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 GATD1Q8NB37 220 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 TMEM238LA0A1B0GVL6 79 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 A6NJY4 79 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 RPL36AP83881 106 aaKnown RBP8.35□□□□□ -1.07
TRIM3-211ENST00000532542 RPL36ALQ969Q0 106 aaKnown RBP8.35□□□□□ -1.07
TRIM3-211ENST00000532542 MTORP42345 2549 aa8.35□□□□□ -1.07
TRIM3-211ENST00000532542 TRGV4A0A0C4DH28 118 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 C11orf21Q9P2W6 132 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 U3KQK5 164 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 LINC01545Q5VT33 79 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 MAP6D1Q9H9H5 199 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 TP53TG1Q9Y2A0 90 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 DMDP11532 3685 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 I3L3M4 83 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 TDRG1Q3Y452 100 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 ERASQ7Z444 233 aa8.34□□□□□ -1.07
TRIM3-211ENST00000532542 KLLNB2CW77 178 aa8.34□□□□□ -1.08
TRIM3-211ENST00000532542 STPG4Q8N801 248 aa8.34□□□□□ -1.08
TRIM3-211ENST00000532542 IGSF10Q6WRI0 2623 aa8.34□□□□□ -1.08
TRIM3-211ENST00000532542 CENPEQ02224 2701 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 SOCS3O14543 225 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 PRR9Q5T870 116 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 TMEM141Q96I45 108 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 ZMAT5Q9UDW3 170 aaKnown RBP8.33□□□□□ -1.08
TRIM3-211ENST00000532542 H3BMM0 161 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 LINC00310P59036 64 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 GTF2H5Q6ZYL4 71 aa8.33□□□□□ -1.08
TRIM3-211ENST00000532542 LINC01006Q8NI28 216 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms