RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 IGHV3OR15-7A0A075B7D8 119 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 CD28P10747 220 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 SLC25A16P16260 332 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 ZNF32P17041 273 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 DSCR4P56555 118 aaPredicted RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 KRTAP12-2P59991 146 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 SNRPFP62306 86 aaKnown RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 RPL18Q07020 188 aaKnown RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 CIRBPQ14011 172 aaKnown RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 C12orf73Q69YU5 71 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 RPL7L1Q6DKI1 246 aaKnown RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 NOXRED1Q6NXP6 359 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 C16orf47Q6ZP98 133 aaPredicted RBP2.06□□□□□ -2.08
CD44-229ENST00000528672 FAM216BQ8N7L0 139 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 CCL4L1Q8NHW4 92 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 SPTSSAQ969W0 71 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 B9D2Q9BPU9 175 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 NABP2Q9BQ15 211 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 OSTCQ9NRP0 149 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 MYLKQ15746 1914 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 CHD6Q8TD26 2715 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 NFAT5O94916 1531 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 CDC42BPGQ6DT37 1551 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 GPR179Q6PRD1 2367 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 CLTCL1P53675 1640 aa2.06□□□□□ -2.08
CD44-229ENST00000528672 UTRNP46939 3433 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 IFT172Q9UG01 1749 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 KDM3BQ7LBC6 1761 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 F2Z2F3 143 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 C3orf84H3BNL1 204 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 LEPROTO15243 131 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 CXCL8P10145 99 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 RNASE2P10153 161 aaKnown RBP2.05□□□□□ -2.08
CD44-229ENST00000528672 RBM3P98179 157 aaKnown RBP2.05□□□□□ -2.08
CD44-229ENST00000528672 Q1T7F1 81 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 LINC00483Q53H64 154 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 DEFB121Q5J5C9 76 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 FAM104BQ5XKR9 115 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 LYPD5Q6UWN5 251 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 SOSTDC1Q6X4U4 206 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 TOMM5Q8N4H5 51 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 TAS2R4Q9NYW5 299 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 TRAPPC1Q9Y5R8 145 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 ITSN1Q15811 1721 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 COL24A1Q17RW2 1714 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 SUPT6HQ7KZ85 1726 aaKnown RBP2.05□□□□□ -2.08
CD44-229ENST00000528672 DOCK2Q92608 1830 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 MIA3Q5JRA6 1907 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 MCM3APO60318 1980 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 PIEZO1Q92508 2521 aa2.05□□□□□ -2.08
CD44-229ENST00000528672 IGKV1D-17A0A075B6S4 117 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 LOC285095A0A1B0GVY8 99 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 FXYD1O00168 92 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 FLNBO75369 2602 aaKnown RBP2.04□□□□□ -2.08
CD44-229ENST00000528672 IL4P05112 153 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 ACYP1P07311 99 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 PIRTP0C851 137 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 RGPD1P0DJD0 1748 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 CCL5P13501 91 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 CKS2P33552 79 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 POLEQ07864 2286 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 PTPN13Q12923 2485 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 NWD1Q149M9 1564 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 RHOHQ15669 191 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 ASB16-AS1Q495Z4 193 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.04□□□□□ -2.08
CD44-229ENST00000528672 Q6P435 159 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 KCPQ6ZWJ8 1503 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 LINC00643Q86TS7 51 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 BAGE3Q86Y29 109 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 BAGE2Q86Y30 109 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 RMI2Q96E14 147 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 SLC50A1Q9BRV3 221 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 PEAK1Q9H792 1746 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 KLK12Q9UKR0 248 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 HILPDAQ9Y5L2 63 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 BDP1A6H8Y1 2624 aa2.04□□□□□ -2.08
CD44-229ENST00000528672 KIAA1671Q9BY89 1806 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 NWD2Q9ULI1 1742 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 LRP6O75581 1613 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 ADCY10Q96PN6 1610 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 CEP170BQ9Y4F5 1589 aaPredicted RBP2.03□□□□□ -2.08
CD44-229ENST00000528672 AGLP35573 1532 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 IGLV3-12A0A075B6K2 115 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 TCRBV4S1A1TA0A5B7 111 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 C2orf70A6NJV1 201 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 H7BZZ5 65 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 GNRH2O43555 120 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 HCRTO43612 131 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 BCE1O60756 84 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 CPSF4O95639 269 aaKnown RBP2.03□□□□□ -2.08
CD44-229ENST00000528672 SAA1P0DJI8 122 aaPredicted RBP2.03□□□□□ -2.08
CD44-229ENST00000528672 TSPEAR-AS2P59090 65 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 ZNF56Q15929 161 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 PSMG4Q5JS54 123 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 TMEM170BQ5T4T1 132 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 SDIM1Q6ZPB5 146 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 MIR17HGQ75NE6 70 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 CLEC2BQ92478 149 aa2.03□□□□□ -2.08
CD44-229ENST00000528672 MRPL35Q9NZE8 188 aaKnown RBP2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms