RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 NAPSAO96009 420 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 MT-ND4LP03901 98 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 FGF7P21781 194 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 S100GP29377 79 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 AQP4P55087 323 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 SMIM11AP58511 58 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 CDC42P60953 191 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 NEDD8Q15843 81 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 Q6Q795 121 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 Q6ZS92 163 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 PHF13Q86YI8 300 aaPredicted RBP1.81□□□□□ -2.12
CD44-223ENST00000526553 LINC00471Q8N535 108 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 OR4K15Q8NH41 348 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 NEK7Q8TDX7 302 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 C10orf82Q8WW14 230 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 GPR146Q96CH1 333 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 SMR3AQ99954 134 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 VPS25Q9BRG1 176 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 TIMM21Q9BVV7 248 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 SLC39A9Q9NUM3 307 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 RASL12Q9NYN1 266 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 TAS2R8Q9NYW2 309 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 SONP18583 2426 aaKnown RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 NSD1Q96L73 2696 aaPredicted RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 ARHGAP32A7KAX9 2087 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 NINQ8N4C6 2090 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 HEATR5BQ9P2D3 2071 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 MEIS3P1A6NDR6 274 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 ZNF705FA8MVS1 300 aaPredicted RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 PPP5D1E7EU14 171 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 SHBGP04278 402 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 OR10J4P0C629 311 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 UBBP0CG47 229 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 S100A4P26447 101 aaKnown RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 CMPK1P30085 196 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 S100A11P31949 105 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 PIGPP57054 158 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 TCTAP57738 103 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 YPEL3P61236 119 aaPredicted RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 MAXP61244 160 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 HSPE1P61604 102 aaKnown RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 RRAS2P62070 204 aaPredicted RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 UBA52P62987 128 aaKnown RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 HES1Q14469 280 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 TPRXLQ17RH7 258 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 IQCJQ1A5X6 159 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 COL5A1-AS1Q5SY13 56 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 FAM27BQ5VT28 67 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 MIR17HGQ75NE6 70 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 TRAPPC6BQ86SZ2 158 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 SFT2D1Q8WV19 159 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 ARL11Q969Q4 196 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 TMEM106AQ96A25 262 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 C2orf88Q9BSF0 95 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 SEC11CQ9BY50 192 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 BANF2Q9H503 90 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 METTL1Q9UBP6 276 aaKnown RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 CKLFQ9UBR5 152 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 TP73-AS1Q9UF72 201 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 CYSLTR1Q9Y271 337 aa1.8□□□□□ -2.12
CD44-223ENST00000526553 ANK3Q12955 4377 aaKnown RBP1.8□□□□□ -2.12
CD44-223ENST00000526553 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.79□□□□□ -2.12
CD44-223ENST00000526553 TRAV17A0A0B4J275 112 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 LOC100130705A0A1B0GUX0 176 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 TLCD2A6NGC4 264 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 E7EQ34 232 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 TRAPPC2LH3BP13 241 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 OR2J2O76002 312 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 TRGC1P0CF51 173 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 RPS3P23396 243 aaKnown RBP eCLIP1.79□□□□□ -2.12
CD44-223ENST00000526553 SNCAP37840 140 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 GNG10P50151 68 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 SUPT4H1P63272 117 aaKnown RBP1.79□□□□□ -2.12
CD44-223ENST00000526553 DCDP81605 110 aaKnown RBP1.79□□□□□ -2.12
CD44-223ENST00000526553 PSMG4Q5JS54 123 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 GOLT1AQ6ZVE7 132 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 GTF2H5Q6ZYL4 71 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 S100A7AQ86SG5 101 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 LRRC28Q86X40 367 aaPredicted RBP1.79□□□□□ -2.12
CD44-223ENST00000526553 TOMM5Q8N4H5 51 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 KCNRGQ8N5I3 272 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 OR4E2Q8NGC2 313 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 PFN4Q8NHR9 129 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 LCN9Q8WX39 176 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 GSKIPQ9P0R6 139 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 OR52A1Q9UKL2 312 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 ABCA1O95477 2261 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 STAB1Q9NY15 2570 aa1.79□□□□□ -2.12
CD44-223ENST00000526553 MXRA5Q9NR99 2828 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 MED12Q93074 2177 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 KIAA1549Q9HCM3 1950 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 A0A096LPI6 279 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 CXorf51AA0A1B0GTR3 108 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 SNRPGP15A8MWD9 76 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 BUB1B-PAK6H3BSN5 160 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 LYRM1O43325 122 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 PGLYRP1O75594 196 aaPredicted RBP1.78□□□□□ -2.12
CD44-223ENST00000526553 ATG12O94817 140 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 TCL1BO95988 128 aa1.78□□□□□ -2.12
CD44-223ENST00000526553 DBIP07108 87 aaKnown RBP1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms